PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003221.1_g000082.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 339aa    MW: 37886.7 Da    PI: 7.7298
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003221.1_g000082.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20186236255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ta eAaka+++a+ kl+g
  Rmu_sc0003221.1_g000082.1 186 HYRGVRQRP-WGKYAAEIRDP---NrRGSRVWLGTFDTAIEAAKAYDRAAFKLRG 236
                                8********.**********9...4334*************************98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
METALSSDMV VLDYIKNHLL GDFSPMSKSS ALTELSASSS STSSSSDLSR SQSSSLSTSQ  60
SSIEISDYLD NELFDFTSNN PIPNDYFFEF ETKPQVIDLT TPKPTDLSSQ TSFEFDSKPQ  120
ATNTSFFEFQ PEVQILNQTA PKPVTSARKP ALTISLPNKT EWIQFSKSEK PPVVQKTVQN  180
EERKKHYRGV RQRPWGKYAA EIRDPNRRGS RVWLGTFDTA IEAAKAYDRA AFKLRGSKAI  240
LNFPLEAGKS DPQPKPAAVV ERKRRREVEV KPEPVVVKKE KVTVSEEAVS YIKDMPLTPS  300
SWTAAYWDSD TDMKGIFNVP PLSPLSPHPA MGFSQLMVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262266RKRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-69ERF family protein