PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0003221.1_g000082.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 339aa MW: 37886.7 Da PI: 7.7298 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.1e-20 | 186 | 236 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + + r++lg+f+ta eAaka+++a+ kl+g Rmu_sc0003221.1_g000082.1 186 HYRGVRQRP-WGKYAAEIRDP---NrRGSRVWLGTFDTAIEAAKAYDRAAFKLRG 236 8********.**********9...4334*************************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 339 aa Download sequence |
METALSSDMV VLDYIKNHLL GDFSPMSKSS ALTELSASSS STSSSSDLSR SQSSSLSTSQ 60 SSIEISDYLD NELFDFTSNN PIPNDYFFEF ETKPQVIDLT TPKPTDLSSQ TSFEFDSKPQ 120 ATNTSFFEFQ PEVQILNQTA PKPVTSARKP ALTISLPNKT EWIQFSKSEK PPVVQKTVQN 180 EERKKHYRGV RQRPWGKYAA EIRDPNRRGS RVWLGTFDTA IEAAKAYDRA AFKLRGSKAI 240 LNFPLEAGKS DPQPKPAAVV ERKRRREVEV KPEPVVVKKE KVTVSEEAVS YIKDMPLTPS 300 SWTAAYWDSD TDMKGIFNVP PLSPLSPHPA MGFSQLMVV |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 262 | 266 | RKRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47230.1 | 2e-69 | ERF family protein |