PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003154.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

E2F/DP

Protein Properties

Length: 458aa MW: 50517.4 Da PI: 4.5507

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003154.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	86.6	1.9e-27	137	202	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg Rmu_sc0003154.1_g000003.1 137 RYDSSLGLLTKKFINLIKHAEDGILDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 202 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MSGYRAPNPP PPQPPQRQLP FSSLKPPFSA SLDYHAFAPD RRPPPPPDHL PAEGITVKPP 60 LKRKSDTADY DEPNDRAAAP EYTDIVNSPL QTPVPVKVGK ANKASRLSKL NRAGPQTPAS 120 NVGSPSGANL TPAGPCRYDS SLGLLTKKFI NLIKHAEDGI LDLNKAADTL EVQKRRIYDI 180 TNVLEGIGLI EKKLKNRIQW KGLEATRTGD ADENYDGLKA QVENLSTEEG RLDEQIREMQ 240 ERLSNLSEEE SNKKWLFVTE EDIKGLPCFQ NETLIAIKAP HGTTLEVPDP DEAVDYPQRR 300 YRMVLRSMMG PIDVYLVSQF EEKFEEINGA EEPGSIPSTS GLCENPAPTI VNEDTGKHVE 360 MQGQEDHRVS ADPTASQDFM SGIMKIVPSD VNCDADYWLL SDDASVSITD IWRTETGVEW 420 NEFGALNEDY SMGNVTPRAQ TLPSSATEVP STANPTRS

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MSGYRAPNPP PPQPPQRQLP FSSLKPPFSA SLDYHAFAPD RRPPPPPDHL PAEGITVKPP  60
LKRKSDTADY DEPNDRAAAP EYTDIVNSPL QTPVPVKVGK ANKASRLSKL NRAGPQTPAS  120
NVGSPSGANL TPAGPCRYDS SLGLLTKKFI NLIKHAEDGI LDLNKAADTL EVQKRRIYDI  180
TNVLEGIGLI EKKLKNRIQW KGLEATRTGD ADENYDGLKA QVENLSTEEG RLDEQIREMQ  240
ERLSNLSEEE SNKKWLFVTE EDIKGLPCFQ NETLIAIKAP HGTTLEVPDP DEAVDYPQRR  300
YRMVLRSMMG PIDVYLVSQF EEKFEEINGA EEPGSIPSTS GLCENPAPTI VNEDTGKHVE  360
MQGQEDHRVS ADPTASQDFM SGIMKIVPSD VNCDADYWLL SDDASVSITD IWRTETGVEW  420
NEFGALNEDY SMGNVTPRAQ TLPSSATEVP STANPTRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22220.2	1e-145	E2F/DP family protein