PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003147.1_g000018.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 235aa    MW: 27347.2 Da    PI: 9.8025
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003147.1_g000018.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.4e-17855148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT+eEdell ++++++G g W+ ++ + g++R++k+c++rw++yl
  Rmu_sc0003147.1_g000018.1  8 KGAWTKEEDELLRQVIEKHGEGKWHQVPFKAGLNRCRKSCRLRWLNYL 55
                               79********************************************97 PP
2Myb_DNA-binding49.31.1e-1561105147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                rg +T +E + +++++k+lG++ W++Ia +++ gRt++++k++w++y
  Rmu_sc0003147.1_g000018.1  61 RGEFTVDEVDMIIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTY 105
                                899*******************.*********.************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MEGFGVRKGA WTKEEDELLR QVIEKHGEGK WHQVPFKAGL NRCRKSCRLR WLNYLKPNIK  60
RGEFTVDEVD MIIRLHKLLG NRWSLIAGRL PGRTANDVKN YWNTYQRKKN QKMTSGAKKM  120
KDKSQKNTIA PLVVRPRPRT FIKRLNFLER DANLEHIHSE ENSSTSLPTA PPQTLELENV  180
IDWWKVVSED STGSIDRTTC SSLGLEDDFF TNFWVEDMVQ LSTIDGHDLV NNFYA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.19e-63MYB family protein