PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0003147.1_g000006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 217aa MW: 25456.2 Da PI: 10.6105 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.4e-16 | 5 | 52 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll +++ ++G g+W++++ g++R++k+c+ rw++yl Rmu_sc0003147.1_g000006.1 5 KGSWTKEEDQLLRNYIDKHGEGRWHKVPFQAGLNRCRKSCRMRWLNYL 52 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 37.6 | 5.3e-12 | 58 | 99 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 rg + ++E +l +++ k+lG++ W++Iar+++ gRt +++k++w Rmu_sc0003147.1_g000006.1 58 RGDFAEDEVDLMIRLRKLLGNR-WSLIARRLP-GRTSNDVKNYW 99 6788899***************.*********.*********** PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 217 aa Download sequence |
MEVRKGSWTK EEDQLLRNYI DKHGEGRWHK VPFQAGLNRC RKSCRMRWLN YLKPNIKRGD 60 FAEDEVDLMI RLRKLLGNRW SLIARRLPGR TSNDVKNYWS ARRRRDIDFG IMKNKKPPKI 120 TKNTVIRPRP RIFTKSLHYL SARPATSKPI ELAGNSSSSI SPPIQNEVDE WKTLLEGDVL 180 TNFWVEDLAS ISSIGVNSTE QGFEMDLWQF LQEEARQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66370.1 | 9e-56 | MYB family protein |