PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0003047.1_g000010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | FAR1 | ||||||||
Protein Properties | Length: 235aa MW: 27607.6 Da PI: 9.8501 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 25.1 | 5.7e-08 | 22 | 74 | 47 | 90 |
FAR1 47 k...tekerr.....traetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 + ++k+rr r tr++C a ++v k ++ ++vt+++ eHnH+la Rmu_sc0003047.1_g000010.1 22 NigdAKKSRRnmipwGRRYTRVNCPAAFNVLYCKdSQLYKVTSFVREHNHDLA 74 2443222222244447899***********9999899**************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence |
MSRIKPRKEN GVEKDRTPKK QNIGDAKKSR RNMIPWGRRY TRVNCPAAFN VLYCKDSQLY 60 KVTSFVREHN HDLAMDHELQ FLRANRKVEE RPVKQVENLR RAKIYTSAAY EHLVEQAGGY 120 EFVGFLTKDL YNILNRKRRK EQVDGDAQAA LTWMNIRGME SGQFWYKHIT NEEGRLANLF 180 WRDEQSLLDY NAYGEMLVMD STYKTNLYGK LLVVFVGCNN HRAIVVFGFA LILDE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 136 | 141 | RKRRKE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-29 | FAR1 family protein |