PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003005.1_g000017.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 410aa MW: 44523.6 Da PI: 6.9335

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003005.1_g000017.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.8	1.5e-30	149	207	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+ gCpv+k+v+r aed++++++tYeg+Hnh+ Rmu_sc0003005.1_g000017.1 149 RDGCQWRKYGQKMAKGNPCPRAYYRCTMFaGCPVRKQVQRMAEDKTILITTYEGNHNHP 207 7************************988**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MDEQRCDLKH LHSDQSFLGL STTSDHRLVE PPIKEETLFK EIKEVDFFSN NRLPDQPAPG 60 HAENHVGPNH QKLQWVAGSA AHDQTSRAAE DSINLDPKLS FLHDDQSPKS SSHHDHDQEQ 120 VLAATNHDQV SSRRARVSVR ARSEAPMIRD GCQWRKYGQK MAKGNPCPRA YYRCTMFAGC 180 PVRKQVQRMA EDKTILITTY EGNHNHPLPA AAISMANTTS AAAAMLISGS TTSKEAHHHL 240 THPTGLFSSL QPLYGSSMAT FSTSAPFPTI TLDMTGTPNR NPNPMQFLDS SATFPNPLQG 300 NSHPLIGHPM CLNFPQHNHA ALTQAAMQLA EQPHGSMVET ITAAITSDPK FTTALAAAIS 360 SRINNVEDIN AGLQGNTNGI SSLNSNGNEV CAALSGSPQL PQSCTTFSTT

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MDEQRCDLKH LHSDQSFLGL STTSDHRLVE PPIKEETLFK EIKEVDFFSN NRLPDQPAPG  60
HAENHVGPNH QKLQWVAGSA AHDQTSRAAE DSINLDPKLS FLHDDQSPKS SSHHDHDQEQ  120
VLAATNHDQV SSRRARVSVR ARSEAPMIRD GCQWRKYGQK MAKGNPCPRA YYRCTMFAGC  180
PVRKQVQRMA EDKTILITTY EGNHNHPLPA AAISMANTTS AAAAMLISGS TTSKEAHHHL  240
THPTGLFSSL QPLYGSSMAT FSTSAPFPTI TLDMTGTPNR NPNPMQFLDS SATFPNPLQG  300
NSHPLIGHPM CLNFPQHNHA ALTQAAMQLA EQPHGSMVET ITAAITSDPK FTTALAAAIS  360
SRINNVEDIN AGLQGNTNGI SSLNSNGNEV CAALSGSPQL PQSCTTFSTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	2e-55	WRKY family protein