PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002902.1_g000037.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 225aa    MW: 25500.8 Da    PI: 6.9034
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002902.1_g000037.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.91.7e-2350135290
                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                                 Y+eY+ ++GFsvr+ + +k+  n+ +++ +++Cskeg++ +++ + e ++  r  trtgC+ak++  +++++ w+vt ++ eH
  Rmu_sc0002902.1_g000037.1  50 LYCEYGARMGFSVRIMQRRKT--NNIVKQVNYCCSKEGFKLDSDPS-EMKKADRLDTRTGCTAKIRFGLQDNNLWKVTLFVPEH 130
                                7***************98888..888****************9999.999********************************** PP

                       FAR1  86 nHela 90 
                                nH+la
  Rmu_sc0002902.1_g000037.1 131 NHKLA 135
                                ***97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MPTVIDIEDD GEHSMGTALG KDSMFVNRQV SNDDDLYGVI VNSEEEAFNL YCEYGARMGF  60
SVRIMQRRKT NNIVKQVNYC CSKEGFKLDS DPSEMKKADR LDTRTGCTAK IRFGLQDNNL  120
WKVTLFVPEH NHKLAEPEER QFLRSNRKVS NAHQGVIKSM KTAGMSTINT YSYLAEEVGG  180
SQNVGFTKTD CYNFVSRERM IMLEAGDAQS RGCSKLDKFI QEKAN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-25FAR1 family protein