PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002868.1_g000027.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 655aa MW: 76317.1 Da PI: 9.6878

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002868.1_g000027.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.9	6e-22	261	346	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fYn+YA ++GFsvrksk++k+ +g ++++++vCskeg+++e+ +k +e e+r r +trtgC+akl++ + ++++v+++++ Rmu_sc0002868.1_g000027.1 261 NFYNNYALKAGFSVRKSKETKK--KGIVYWKQYVCSKEGETDETWRKkNEIEERDRGKTRTGCNAKLTICHD-GSNYVVKTFNE 341 6*************998877..999*********9998666357788999*********999.9****** PP FAR1 84 eHnHe 88 eHnH+ Rmu_sc0002868.1_g000027.1 342 EHNHA 346 **6 PP

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence
MNGYSRLLKP LRHIQQSPIA GIQSPVAGIR SQVAGFRPTF AGFRSPAAAH PNLLKISPES 60 FFALNRRLSA MYCPSVDVYW PPIDDYQPCI APHTGGQAQS HCNNIDYSST HHHQNVVVKR 120 HDDRIYNSKP GWIKKQPKSF PPMNHVKNLT THVKNFILNT SSLLNTQKNC TTQFSFRIRS 180 RQRPKIISFV VAAALQLRRR RSPAPPKPSL ESYKHVDIME NTSEEWKFFP TETQMAYIPD 240 VEDDMKPKAG QQFESLDATY NFYNNYALKA GFSVRKSKET KKKGIVYWKQ YVCSKEGETD 300 ETWRKKNEIE ERDRGKTRTG CNAKLTICHD GSNYVVKTFN EEHNHAPTTP SRVHLLRSQR 360 IVSTAKKNLI QDLRKTNVAF MQDYYELFKT CIWDSECPEE FEKRWFEALE KSQQTNNEWL 420 EKMFELRGRW IPAYVNKNFS AGMSSSQRVE SAHAFFKRYC DKENTLMDFV TRFNRAVAHQ 480 RHEELIEDHR DLNETPNLKL GMPMEVQMAQ LYTKKYFQHF QAQLHDGNGY IVNAVMEDDS 540 SCVYKTERVF AENFRMRTLV HDKVSNIVTC SCKMFEFEGI PCRHILALLR LKQIMELPKV 600 YILRRWTRFS RIRRERCQGQ DSADNSLIMR HNGMFKIASK LIDEAAISPE GTELV

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence

MNGYSRLLKP LRHIQQSPIA GIQSPVAGIR SQVAGFRPTF AGFRSPAAAH PNLLKISPES  60
FFALNRRLSA MYCPSVDVYW PPIDDYQPCI APHTGGQAQS HCNNIDYSST HHHQNVVVKR  120
HDDRIYNSKP GWIKKQPKSF PPMNHVKNLT THVKNFILNT SSLLNTQKNC TTQFSFRIRS  180
RQRPKIISFV VAAALQLRRR RSPAPPKPSL ESYKHVDIME NTSEEWKFFP TETQMAYIPD  240
VEDDMKPKAG QQFESLDATY NFYNNYALKA GFSVRKSKET KKKGIVYWKQ YVCSKEGETD  300
ETWRKKNEIE ERDRGKTRTG CNAKLTICHD GSNYVVKTFN EEHNHAPTTP SRVHLLRSQR  360
IVSTAKKNLI QDLRKTNVAF MQDYYELFKT CIWDSECPEE FEKRWFEALE KSQQTNNEWL  420
EKMFELRGRW IPAYVNKNFS AGMSSSQRVE SAHAFFKRYC DKENTLMDFV TRFNRAVAHQ  480
RHEELIEDHR DLNETPNLKL GMPMEVQMAQ LYTKKYFQHF QAQLHDGNGY IVNAVMEDDS  540
SCVYKTERVF AENFRMRTLV HDKVSNIVTC SCKMFEFEGI PCRHILALLR LKQIMELPKV  600
YILRRWTRFS RIRRERCQGQ DSADNSLIMR HNGMFKIASK LIDEAAISPE GTELV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-40	FAR1 family protein