PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002791.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 417aa MW: 48317.2 Da PI: 5.5624

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002791.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.6	3.5e-17	116	227	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerr.....traetrtg 61 kfY+ Y++ +GFsvr+++ +k+ ng +++r++vCsk+g ++ + +k + k+rr + tr++ Rmu_sc0002791.1_g000004.1 116 KFYSLYSRILGFSVRRDRLQKE-GNGLVVRRQWVCSKQGLASIKCRKqkgvdkkktannekigeqK-KSRRniiprGERYTRVN 197 6***************9998.8999********99887777789*******99742.33334555467899* PP FAR1 62 Ckaklkvkkek.dgkwevtkleleHnHela 90 C ++ v+ k ++ ++vtk+++eHnH+la Rmu_sc0002791.1_g000004.1 198 CPVSFSVRYCKdKELYRVTKFVQEHNHDLA 227 *******998999***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MDTDEGGLRY SDHIYHECLS SDDESEDEIL IRFGKCTKVT ARTKEANDSI IPGESGELRK 60 SPGVVEEEET LPECAVERTE YVNHTGSAQL NGKHFEDLTM DDMMGVYFPT VEEAEKFYSL 120 YSRILGFSVR RDRLQKEGNG LVVRRQWVCS KQGLASIKCR KQKGVDKKKT ANNEKIGEQK 180 KSRRNIIPRG ERYTRVNCPV SFSVRYCKDK ELYRVTKFVQ EHNHDLAKSH EVQFLRSNRR 240 VEDKDVAQVE CLRRAQVHTS RAYEQLVEQA GGHDGVGFLM KDLYNKIYEL RKNAEMDGDE 300 QAAITWMNMR GMESEEFCCR YSLDEEGRLA NLFWRDYQSF LDYSAYSDVV IMDSTYKTNL 360 YGKPLVVFVG CNNHRATVVF GFALIRDERE DTYTWVFENI LESMDYKQPS SILTDGD

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MDTDEGGLRY SDHIYHECLS SDDESEDEIL IRFGKCTKVT ARTKEANDSI IPGESGELRK  60
SPGVVEEEET LPECAVERTE YVNHTGSAQL NGKHFEDLTM DDMMGVYFPT VEEAEKFYSL  120
YSRILGFSVR RDRLQKEGNG LVVRRQWVCS KQGLASIKCR KQKGVDKKKT ANNEKIGEQK  180
KSRRNIIPRG ERYTRVNCPV SFSVRYCKDK ELYRVTKFVQ EHNHDLAKSH EVQFLRSNRR  240
VEDKDVAQVE CLRRAQVHTS RAYEQLVEQA GGHDGVGFLM KDLYNKIYEL RKNAEMDGDE  300
QAAITWMNMR GMESEEFCCR YSLDEEGRLA NLFWRDYQSF LDYSAYSDVV IMDSTYKTNL  360
YGKPLVVFVG CNNHRATVVF GFALIRDERE DTYTWVFENI LESMDYKQPS SILTDGD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-42	FAR1 family protein