PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002748.1_g000019.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 283aa    MW: 31983.2 Da    PI: 5.2265
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002748.1_g000019.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.87.8e-3065115151
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                krien   rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss
  Rmu_sc0002748.1_g000019.1  65 KRIENAASRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGKLYEFSS 115
                                79***********************************************96 PP
2K-box71.23.2e-24136230598
                      K-box   5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                                sgk+ +++ ++e  +++ + + k+ie +++++R+llG++Les+s++eLqq+e+qLe+sl kiR++Kn +l+eqie +++ ek+l
  Rmu_sc0002748.1_g000019.1 136 SGKAvQDHDHMELANEDTSSMAKRIEFIESSKRKLLGDGLESCSIEELQQIENQLERSLAKIRDRKNLMLREQIELMKEEEKSL 219
                                5666345556666778899***************************************************************** PP

                      K-box  88 qeenkaLrkkl 98 
                                 ++n +Lr+k 
  Rmu_sc0002748.1_g000019.1 220 LKQNVELREKC 230
                                ********985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MFAVDEGKAP PCRPQEPPAT GVVSNFRHVS PPDTRVERDP CVPPLSTLGE SKSECLNMWG  60
KTQMKRIENA ASRQVTFSKR RNGLLKKAFE LSVLCDAEVA LIIFSTRGKL YEFSSCSSLN  120
NTIDRFQKRV KDQGLSGKAV QDHDHMELAN EDTSSMAKRI EFIESSKRKL LGDGLESCSI  180
EELQQIENQL ERSLAKIRDR KNLMLREQIE LMKEEEKSLL KQNVELREKC GMQPIGPPNN  240
RGGGGEEDEE DDVETESETE TMEVETELFI GPPKRQRSSK KIP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.15e-54MIKC_MADS family protein