PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0002715.1_g000012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 226aa MW: 24408 Da PI: 7.9406 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.9e-19 | 31 | 80 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrdp++ + r++lg+f +ae+Aa+a++aa++ l+g Rmu_sc0002715.1_g000012.1 31 KYRGVRKRP-WGKYAAEIRDPYK---KSRVWLGTFESAEDAARAYDAAARVLRG 80 8********.**********765...6***********************9998 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence |
MRRGRGAAAV AARANGPPAE PNGSRPIKEV KYRGVRKRPW GKYAAEIRDP YKKSRVWLGT 60 FESAEDAARA YDAAARVLRG PKAKTNFPTY SNHLCYNNPA DPNLDSKLFG SGYGFHEDSP 120 VGPARPASSS LSSTVESFSG PRAAPQRSSA TIVAESSRRK QPRTPPMDPE DCHSDCDSSS 180 SVVEDDGEFA SSFRKPLDFD LNFPPLDEVD AAGGDGQDLG WTALCL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G20310.1 | 8e-35 | ERF family protein |