PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002549.1_g000025.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 402aa MW: 44592 Da PI: 6.8673

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002549.1_g000025.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.3	2.6e-16	146	191	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ Rmu_sc0002549.1_g000025.1 146 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 191 899***************************.*********996 PP
2	Myb_DNA-binding	55.7	1.2e-17	198	241	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ Rmu_sc0002549.1_g000025.1 198 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 241 678*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MMANHNASAI NATENPNALS CFPSSSSCSS SSSPGFSMGM VYADMGSLSL SVSNYDLVSS 60 HESSYYNTSN SNLSHNHEVE NGNTPYFWGF PPSLGTRSAE EHHGHHNNSD FRGGGKACSD 120 SMSDDGTEEH NESMNHKNGQ SKLCARGHWR PAEDSKLKEL VALYGPQNWN LIAEKLEGRS 180 GKSCRLRWFN QLDPRINRRA FSEEEEERLM QAHRIYGNKW AMIARLFPGR TDNAVKNHWH 240 VIMARKYREQ SSAYRRRKLS QSVCRASSME ENMNSAPPAV PYSYLNNYGS SGNSHNMASW 300 EEAAIITNEK VPPPFQFLPG TNDEAGQISS GNFYDHPPYM MNVMAMRQSN YYHTLQSFSD 360 STSASPSLVS AGGKLSSTTS AGDQERRDIA PSFIDFLGVG AT

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MMANHNASAI NATENPNALS CFPSSSSCSS SSSPGFSMGM VYADMGSLSL SVSNYDLVSS  60
HESSYYNTSN SNLSHNHEVE NGNTPYFWGF PPSLGTRSAE EHHGHHNNSD FRGGGKACSD  120
SMSDDGTEEH NESMNHKNGQ SKLCARGHWR PAEDSKLKEL VALYGPQNWN LIAEKLEGRS  180
GKSCRLRWFN QLDPRINRRA FSEEEEERLM QAHRIYGNKW AMIARLFPGR TDNAVKNHWH  240
VIMARKYREQ SSAYRRRKLS QSVCRASSME ENMNSAPPAV PYSYLNNYGS SGNSHNMASW  300
EEAAIITNEK VPPPFQFLPG TNDEAGQISS GNFYDHPPYM MNVMAMRQSN YYHTLQSFSD  360
STSASPSLVS AGGKLSSTTS AGDQERRDIA PSFIDFLGVG AT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	5e-77	MYB family protein