PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002531.1_g000064.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 747aa MW: 84082 Da PI: 9.4255

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002531.1_g000064.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.2	8.4e-21	46	138	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 +fYn+YAk +GF+vr+++++ s +++g++t+ ++vCs +gkr+ee + +++ rr+++etr +C + +kv+ ++ + + v+++ Rmu_sc0002531.1_g000064.1 46 SFYNAYAKAMGFDVRNDYKRLSiRTTGRVTSLRLVCSAQGKRREEYMSnKKRVRRPKKETRFSCPCLFKVRYRSnINAYIVDDF 129 5****************999999**************9988845677889*************9899*** PP FAR1 82 eleHnHela 90 ++H+H+la Rmu_sc0002531.1_g000064.1 130 ITNHSHQLA 138 *****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 747 aa Download sequence
MDGSYESSMC NGSDCNEMQY KGVRYDKLST EDLKGQEFNT VEEAESFYNA YAKAMGFDVR 60 NDYKRLSIRT TGRVTSLRLV CSAQGKRREE YMSNKKRVRR PKKETRFSCP CLFKVRYRSN 120 INAYIVDDFI TNHSHQLAQA HESHLLRSHR SVEDHHLALA TSMQRVSVKP CHTYEYIVDR 180 SGGFKNVGKG GGGDVFTESS KGGGGDGGTT KIQADELIAC GKNVKKDNEF KKLMASKWHT 240 LTPTEKAKYS IPGPNVSSGI TKKRRNTSKS SATISTRCSP HQFQQVVSKF SGEQIAAITE 300 LGFGTLVQLS CTRVRRDLCR FLIDKFDTEE CLIELHGKSM KMSSSDFKQI MSVPEGGIDV 360 DFSGSIEDPD MKPLVDYYVG NSGYIEISDI IAKLDGVNVV DNHFGVSFIL LALGTLLCPN 420 TSTHLNPKYL LALKNLKNIR SMNWASFSFE FLLESVRLFK QNKAKYISGC VLFFQLYYYN 480 VIGYGRALVD CEKPSIAAWG VEQSAKLIKW ILRKGGHESP NILVSKVYNS SEQKHEAENV 540 VALRADVESV KSTIIRVEEK IDELGGLLRG IQEGLFKVVR QDGDQDLKTL DMIFNNEVMI 600 HFNEGCTFSS FKIIHPDCVP VQKNGFDCGI FMIKFMEDYE NASKAGDKYH SVNERLRIAL 660 TLLRHPDNQA RNNIAEARQK SLQKVICKKR GPNTMKIDQD ITARSDTDES LQRSPKKMKA 720 IHEIDAANVN KKKGPGRPRG SKNKPKK

Sequence ? help Back to Top

Protein Sequence Length: 747 aa Download sequence

MDGSYESSMC NGSDCNEMQY KGVRYDKLST EDLKGQEFNT VEEAESFYNA YAKAMGFDVR  60
NDYKRLSIRT TGRVTSLRLV CSAQGKRREE YMSNKKRVRR PKKETRFSCP CLFKVRYRSN  120
INAYIVDDFI TNHSHQLAQA HESHLLRSHR SVEDHHLALA TSMQRVSVKP CHTYEYIVDR  180
SGGFKNVGKG GGGDVFTESS KGGGGDGGTT KIQADELIAC GKNVKKDNEF KKLMASKWHT  240
LTPTEKAKYS IPGPNVSSGI TKKRRNTSKS SATISTRCSP HQFQQVVSKF SGEQIAAITE  300
LGFGTLVQLS CTRVRRDLCR FLIDKFDTEE CLIELHGKSM KMSSSDFKQI MSVPEGGIDV  360
DFSGSIEDPD MKPLVDYYVG NSGYIEISDI IAKLDGVNVV DNHFGVSFIL LALGTLLCPN  420
TSTHLNPKYL LALKNLKNIR SMNWASFSFE FLLESVRLFK QNKAKYISGC VLFFQLYYYN  480
VIGYGRALVD CEKPSIAAWG VEQSAKLIKW ILRKGGHESP NILVSKVYNS SEQKHEAENV  540
VALRADVESV KSTIIRVEEK IDELGGLLRG IQEGLFKVVR QDGDQDLKTL DMIFNNEVMI  600
HFNEGCTFSS FKIIHPDCVP VQKNGFDCGI FMIKFMEDYE NASKAGDKYH SVNERLRIAL  660
TLLRHPDNQA RNNIAEARQK SLQKVICKKR GPNTMKIDQD ITARSDTDES LQRSPKKMKA  720
IHEIDAANVN KKKGPGRPRG SKNKPKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-14	FAR1 family protein