PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002531.1_g000027.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YA
Protein Properties Length: 370aa    MW: 40548.1 Da    PI: 8.2499
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002531.1_g000027.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.22.5e-32161217158
                  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                +ep+YVNaKQy++Il+RRq+Rak+e e+kl +k rkpylheSRh+hAlrR+Rg+gGrF
  Rmu_sc0002531.1_g000027.1 161 EEPVYVNAKQYHGILRRRQSRAKAELERKL-IKVRKPYLHESRHQHALRRARGCGGRF 217
                                69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    
MPAKSKDVDP GTQTVLQSSM QPWWRGAGNS SSFGESVVAS SLGEHGNRFV MNGAMQSQAD  60
AGANFKKDVQ ATIGSQSDGN SGHENQQMKS TSSAVVAKLG EHLDANSQME LVGHSIVLTS  120
YPYSDPQYSA MLTHYRPQAM VPPQFYGLHH GRMPLPLEME EEPVYVNAKQ YHGILRRRQS  180
RAKAELERKL IKVRKPYLHE SRHQHALRRA RGCGGRFLNT KKQDDSDANS SSEKTINLDA  240
NFSPKSAKSG FECFPNDSNG NFVSSNVQQE GSGSWFRTLN NHTLSNGNGN GHVPSSTYHT  300
TFHDGKEGVF LGVAEGVQSP AWKNTSCAMS VRQFILGFGY FVIIGTIPQE IGDGFHAVFS  360
HEPLPLTPCC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.12e-36NF-YA family protein