PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002530.1_g000012.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 318aa    MW: 35740.5 Da    PI: 6.8848
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002530.1_g000012.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.3e-12181206126
                                --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                y   +C+++ +tG+C yGd+CkF+H+
  Rmu_sc0002530.1_g000012.1 181 YQPDICKDYKETGYCGYGDSCKFMHD 206
                                67789********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MADSGGNAEP GEVCNFFRKP TTKRNFRKRT SEAEDNEESN SGSAVLPSQR KAAKPDGKLF  60
FSSGPSKSSA SDDGKVIFEF KSSKEIQVEH DSRATATLET ETEFSRDARA VRERVLKQSE  120
EALKGTGKST GNEKLYKGLH GYTDHKAGFR RELTVASEKA GGSHGPLRAS AHIRASTRFD  180
YQPDICKDYK ETGYCGYGDS CKFMHDRGDY KSGWQMEREW DEAEKVRKRN LALREAGEEV  240
DDDDDDDDDD DDSLPFACFI CRQTFVDPVV TKCNHYFCEH CALKHHSKNK KCFVCNKPTL  300
GIFNTAHEIR KRIAAEGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06420.21e-154C3H family protein