PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002525.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 340aa    MW: 37403.4 Da    PI: 6.7755
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002525.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000542012391255
                                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                R +++ +++  L +++ +      +K + a++L +A+ YI+ Lq
  Rmu_sc0002525.1_g000003.1 201 RKEKLGDRITALHQIVSPF-----GKTDTASVLLEAIGYIRFLQ 239
                                6677888999999999987.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MAGNPNWWST HPPSSIFPSQ YVLGSSNSLP QLNSFPDQHN LQPPQSWSQL LLGGLSGEDQ  60
DNFGSLNHFP PKRLENWEDH QQQILIPQSY PRVNPVVDSN IIKQEVNSQN NSNLCGGDGG  120
EEFQAPYNNR PSWSAAQINM PVSSPRSCIT SLSSNNILDF SYNQKNQHAD HSSECNSPPT  180
DGMCKKARVQ PSSSQPPLKV RKEKLGDRIT ALHQIVSPFG KTDTASVLLE AIGYIRFLQS  240
QIEALSSPYL GNASKNMRNN PHSVQGERNC VFPEDPGQLL NDNCSLKRKG ASNQDSHQDY  300
KAKDLRSKGL CLVPVSCTQN VGGDINIGAD YWAPAYGSGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.17e-72bHLH family protein