PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002489.1_g000048.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 495aa MW: 57332 Da PI: 7.7061

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002489.1_g000048.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.5	4.5e-18	50	135	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 Y eY+ ++GFsvr+ + +k+ n+ + + ++ skeg++ +++ + e ++ r trtgC+ak+ ++++++w+ t ++ +H Rmu_sc0002489.1_g000048.1 50 LYYEYGARMGFSVRIMQRRKT--NNVVRQVNYAYSKEGFKLDSDPS-EVKKADRLDTRTGCTAKILFGLQDNNVWKATLFVPDH 130 79************98888..889************9999.9999***************************** PP FAR1 86 nHela 90 nH+la Rmu_sc0002489.1_g000048.1 131 NHKLA 135 *97 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MPTVSNVEDD QEHNKTIDLG KDSMIVNRQA SNNDNLYGVI VNSEEEAYNL YYEYGARMGF 60 SVRIMQRRKT NNVVRQVNYA YSKEGFKLDS DPSEVKKADR LDTRTGCTAK ILFGLQDNNV 120 WKATLFVPDH NHKLAKPEER PFLRSNRKVL ESHKGVIRSM KSAGMSTINT YSYLAEEVGG 180 SQTVGFTKTN CYNFVSREKM IMLEAGDAQS LINLFKKKKI EDPMFFYTVQ VDQENRMTNF 240 FWRDGKSKTD FECFGDVIVF DTTYRTNKYN MICAPFVGVN HHWKNVLFGC AFLLDETTAS 300 FIWLFETFLE AMEGKKPKTI FTDRCQAMAN AIEKVFPETR HQLCLWHISK NAVQNLNCLY 360 RNPDFSELFK KFLFGRVTED EFESTWNEII EKFDLEGNTW LKTLYDLREK WCALFSKDTF 420 SAGKLSPQRS ESTNNVFTLM STKTLNFTEF VHHYDKQAEQ MSSSELEETF RCNNGIPTRA 480 ARSSGIKKQA GMVYT

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MPTVSNVEDD QEHNKTIDLG KDSMIVNRQA SNNDNLYGVI VNSEEEAYNL YYEYGARMGF  60
SVRIMQRRKT NNVVRQVNYA YSKEGFKLDS DPSEVKKADR LDTRTGCTAK ILFGLQDNNV  120
WKATLFVPDH NHKLAKPEER PFLRSNRKVL ESHKGVIRSM KSAGMSTINT YSYLAEEVGG  180
SQTVGFTKTN CYNFVSREKM IMLEAGDAQS LINLFKKKKI EDPMFFYTVQ VDQENRMTNF  240
FWRDGKSKTD FECFGDVIVF DTTYRTNKYN MICAPFVGVN HHWKNVLFGC AFLLDETTAS  300
FIWLFETFLE AMEGKKPKTI FTDRCQAMAN AIEKVFPETR HQLCLWHISK NAVQNLNCLY  360
RNPDFSELFK KFLFGRVTED EFESTWNEII EKFDLEGNTW LKTLYDLREK WCALFSKDTF  420
SAGKLSPQRS ESTNNVFTLM STKTLNFTEF VHHYDKQAEQ MSSSELEETF RCNNGIPTRA  480
ARSSGIKKQA GMVYT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-95	FAR1 family protein