PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002483.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 1764aa MW: 192404 Da PI: 6.3709

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002483.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.2	2.2e-09	865	907	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE e +++ +G++ +k+Ia+ + ++t +c+++++k+ Rmu_sc0002483.1_g000001.1 865 PWTPEEKEAFIEKLVVFGKD-FKKIASFFD-HKTTADCVEFYYKH 907 8***************99.*****.**********97 PP
2	Myb_DNA-binding	33.6	9.4e-11	1080	1120	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++av +G++ ++ I+r++ +R+ +qck ++ Rmu_sc0002483.1_g000001.1 1080 DWTDEEKSSFIQAVSSHGKD-FAMISRCVR-TRSQNQCKVFFS 1120 6***************99.*****.******8876 PP

Sequence ? help Back to Top
Protein Sequence Length: 1764 aa Download sequence
MGNKGSGSIA EDMRKDLTLV WRYYKKLGKV RNCLVIPGGF DKLSLACFIA FLVLGEGVAA 60 HAIGLVLMPP EPLSWDRKEF LKERKHERSE SLGPVARWRD SPHHAPREFN NRWQSAEFRR 120 PPGHGKQGGW HMFSDDSGHG YASSRSSEKM LEDESFRPSF SRGEGRYGRN GRDSRGSYNQ 180 RDCKGHSWET SSLSPNTPGR PNDMNNEQRP QDDNMTYSSN PHSDFGSTWD QIQLKDHLDR 240 TGGSNGVAAG QKCDRENSLG SMDWRHLKWS RSGSMSSRGS GFSHSSSSKS IGAIDSSEAK 300 TESQPKNATP VQSPSGDATA CVTSAAPSEE TNSRKKPRLG WGEGLAKYEK KKVDPADVIM 360 NKDGAVCPVG NMEFSSHLAD KSPRVTMLSD CASPATPSSV ACSSSPGVEE KPFGKAAGVD 420 NDSNLYRSPG PELQSHQEGF SFKLEKLDYN SLANVTSSLH ELLQSDDPSP MDSSTMRPTA 480 MNKLLIWKGD ISKVLEVTES EIDFLENELK MLNSDSKDSC AAASSSLPVE ESDKSGKEHA 540 TAKNLITRPA PLQIFSSEDT DPQKLALGNG EQGESCGVKD QDMDSPGTAT SKFVEQLPLL 600 KVASSDMGNP TGCAENQDLV QTAERDVECL VAGKDEEKSD LSAHGNSRML LVSEIVTPVS 660 DGLDLCAGVV DTLCDSIFSS NKESANRASD IFNKLLPKDN CEVDISGLGI SSSWKNDSLI 720 KEKFKARKRR LRFMERVITL KYKAHQQLWK EDVRLFSERK YRPKSHKKCD LGLRNTTNGN 780 QKHRSSIRSR FSTPAGNLSL VPTKEVEKFA NKVLCDSQVK LYRNSLKMPA LILDKKEKIV 840 TRFVSSNGLV EDPCAVEKER ALINPWTPEE KEAFIEKLVV FGKDFKKIAS FFDHKTTADC 900 VEFYYKHHKS AAFQKAKKKP DISKLGKSSA NTYMINPGTK WNREVNAASL DILGAASVMA 960 AQADGSTRNR TGRLILGGYK NMKISQSDDV TVERSCTFDV IGNERETAAA DVLAGICGSL 1020 SSEAVSSCIT SSIDPGDGCR EWKCQKVDSL VRRPLTPDVM QSVDDETCSD ESCGEMDPSD 1080 WTDEEKSSFI QAVSSHGKDF AMISRCVRTR SQNQCKVFFS KARKCLGLDL VHPRRGNEGA 1140 SIVDDANGGG SDTEDACVVE TGSGISIDKS GCEMNEDLPL SVMDMDHEDS DPEETINLKC 1200 DPLGSVENNV KGEVDHLDNK ALKSSDALQM EDRPEVVFDD VTNIHDVGDR LSESVPAQRS 1260 EAFSADADAV RDNVAEKRSL VAESLIGEGI SSDLPKLEGQ GERCNTDTSG CGLQVSANDS 1320 NSSGSASDMA AEGSCSGLAA ECLHRVSVEL NSMQKSSVNS LSHENLLATA ISVPENSAVV 1380 EYGKAINQDR LSSTSDLQEG RDKQSLSVGG DDCHKHLPGL PVLTNIDPAH VLRGYPLHMA 1440 TKKEINGHIS SGNLSEVRNL SKPDGPKDCL LQFGNCKPRS SQDFPLVHQK IERRTDTTKA 1500 HSWSSSDTDK PSRNGDVKLF GKILTNTSKS SSSIQENEEN NIHNLSNKSS NLKFSGHHNL 1560 DGNSGVLKFD GSNYAGLENV PRRSYSFWEG NKVQNGSFPD SAILLAKYPA AFGNFTTSSS 1620 KLEQKPLQAV RNNEGHVNGA SVFPSREISS SSSSGIVDYH QVFSRHRDGG AKVPPFTVDV 1680 KQRQDMFDVS RRNGFESSLQ QQGRGIAGMN VVGRGGIMVG GPCTGVSDPV AAIRMHYAKT 1740 EQYGGQGSII REEESWRGKG DIGR

Sequence ? help Back to Top

Protein Sequence Length: 1764 aa Download sequence

MGNKGSGSIA EDMRKDLTLV WRYYKKLGKV RNCLVIPGGF DKLSLACFIA FLVLGEGVAA  60
HAIGLVLMPP EPLSWDRKEF LKERKHERSE SLGPVARWRD SPHHAPREFN NRWQSAEFRR  120
PPGHGKQGGW HMFSDDSGHG YASSRSSEKM LEDESFRPSF SRGEGRYGRN GRDSRGSYNQ  180
RDCKGHSWET SSLSPNTPGR PNDMNNEQRP QDDNMTYSSN PHSDFGSTWD QIQLKDHLDR  240
TGGSNGVAAG QKCDRENSLG SMDWRHLKWS RSGSMSSRGS GFSHSSSSKS IGAIDSSEAK  300
TESQPKNATP VQSPSGDATA CVTSAAPSEE TNSRKKPRLG WGEGLAKYEK KKVDPADVIM  360
NKDGAVCPVG NMEFSSHLAD KSPRVTMLSD CASPATPSSV ACSSSPGVEE KPFGKAAGVD  420
NDSNLYRSPG PELQSHQEGF SFKLEKLDYN SLANVTSSLH ELLQSDDPSP MDSSTMRPTA  480
MNKLLIWKGD ISKVLEVTES EIDFLENELK MLNSDSKDSC AAASSSLPVE ESDKSGKEHA  540
TAKNLITRPA PLQIFSSEDT DPQKLALGNG EQGESCGVKD QDMDSPGTAT SKFVEQLPLL  600
KVASSDMGNP TGCAENQDLV QTAERDVECL VAGKDEEKSD LSAHGNSRML LVSEIVTPVS  660
DGLDLCAGVV DTLCDSIFSS NKESANRASD IFNKLLPKDN CEVDISGLGI SSSWKNDSLI  720
KEKFKARKRR LRFMERVITL KYKAHQQLWK EDVRLFSERK YRPKSHKKCD LGLRNTTNGN  780
QKHRSSIRSR FSTPAGNLSL VPTKEVEKFA NKVLCDSQVK LYRNSLKMPA LILDKKEKIV  840
TRFVSSNGLV EDPCAVEKER ALINPWTPEE KEAFIEKLVV FGKDFKKIAS FFDHKTTADC  900
VEFYYKHHKS AAFQKAKKKP DISKLGKSSA NTYMINPGTK WNREVNAASL DILGAASVMA  960
AQADGSTRNR TGRLILGGYK NMKISQSDDV TVERSCTFDV IGNERETAAA DVLAGICGSL  1020
SSEAVSSCIT SSIDPGDGCR EWKCQKVDSL VRRPLTPDVM QSVDDETCSD ESCGEMDPSD  1080
WTDEEKSSFI QAVSSHGKDF AMISRCVRTR SQNQCKVFFS KARKCLGLDL VHPRRGNEGA  1140
SIVDDANGGG SDTEDACVVE TGSGISIDKS GCEMNEDLPL SVMDMDHEDS DPEETINLKC  1200
DPLGSVENNV KGEVDHLDNK ALKSSDALQM EDRPEVVFDD VTNIHDVGDR LSESVPAQRS  1260
EAFSADADAV RDNVAEKRSL VAESLIGEGI SSDLPKLEGQ GERCNTDTSG CGLQVSANDS  1320
NSSGSASDMA AEGSCSGLAA ECLHRVSVEL NSMQKSSVNS LSHENLLATA ISVPENSAVV  1380
EYGKAINQDR LSSTSDLQEG RDKQSLSVGG DDCHKHLPGL PVLTNIDPAH VLRGYPLHMA  1440
TKKEINGHIS SGNLSEVRNL SKPDGPKDCL LQFGNCKPRS SQDFPLVHQK IERRTDTTKA  1500
HSWSSSDTDK PSRNGDVKLF GKILTNTSKS SSSIQENEEN NIHNLSNKSS NLKFSGHHNL  1560
DGNSGVLKFD GSNYAGLENV PRRSYSFWEG NKVQNGSFPD SAILLAKYPA AFGNFTTSSS  1620
KLEQKPLQAV RNNEGHVNGA SVFPSREISS SSSSGIVDYH QVFSRHRDGG AKVPPFTVDV  1680
KQRQDMFDVS RRNGFESSLQ QQGRGIAGMN VVGRGGIMVG GPCTGVSDPV AAIRMHYAKT  1740
EQYGGQGSII REEESWRGKG DIGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-178	MYB family protein