PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0002441.1_g000004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 25043.9 Da PI: 8.4883 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.4 | 4.7e-20 | 47 | 95 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aa+a++aa+++l+g Rmu_sc0002441.1_g000004.1 47 FRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARSLRG 95 8*******.**********883....5*************************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence |
MRRAGRATAA AANNQSPASC KKPRAAAAAP KTTPSSSQQQ QQPQIRFRGV RKRPWGRFAA 60 EIRDPWKKTR VWLGTFDSAE DAARAYDAAA RSLRGPKAKT NFSLPCDPFY GGDFNDDAIC 120 SKIDVIQASR PTSSSLSSTV ESFSGPRVNS GKPPPMKPTQ RRPVYPVSPE DCHSDCDSSS 180 SVVDDGDDCV LTSSFRKALP FDLNMPPPMD GFDFSGDNVD DHDLQATALC L |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 3e-23 | ERF family protein |