PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002383.1_g000019.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 321aa    MW: 35688.6 Da    PI: 7.2316
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002383.1_g000019.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161462148
                               TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                               +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
  Rmu_sc0002383.1_g000019.1 14 KGPWSPEEDAKLKEYIEKYGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                               79*********************************************97 PP
2Myb_DNA-binding41.92.4e-1369111246
                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                g ++ eEd+++ ++++  G++ W+ Ia+ ++ gRt++++k++w++
  Rmu_sc0002383.1_g000019.1  69 GEFSDEEDKIICNLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                                789******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MGRAPCCDKD NVKKGPWSPE EDAKLKEYIE KYGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDKIIC NLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLNQY  120
SMMGIIPHHS ATFSSLLHHQ TSTSSSSPPS YRSSNNTSAP TYYTHQPRSF TSTANLESHI  180
PFSPSLLSST NTTTNAALQV GQESYVSQPL TQHYQAKDNI LMFGGTTTEA SCSSSDGSYG  240
TGYGEVQLGL QNYFYNNGAE ANNQKIMVSD NGLGLDHDQA PLDYGLEEIK QLISSSTTTS  300
GGCNNFLFDE NKTEEKVMMY Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.14e-76MYB family protein