PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002354.1_g000016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GeBP
Protein Properties Length: 411aa    MW: 44973.3 Da    PI: 8.3824
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002354.1_g000016.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573107.31.1e-33175266197
                     DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskeh 84 
                                klfqrlws+eDei++L+G+ ++k+k+g++p++d++af+ef+kks++++v+k ql +Kirr++kKf+++vkk     + + +k+h
  Rmu_sc0002354.1_g000016.1 175 KLFQRLWSDEDEIIILKGMNEYKTKKGVDPYADMTAFHEFIKKSLKVDVTKIQLQDKIRRMRKKFENNVKK-----KHKPTKAH 253
                                579********************************************************************.....66789*** PP

                     DUF573  85 dqkifelskkiWg 97 
                                d+k+f+lskk+Wg
  Rmu_sc0002354.1_g000016.1 254 DSKTFKLSKKVWG 266
                                ************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    
MAPKRPSPLD EPPAASSSEE EEEASSEEEG SGSESEESES DAEATEPQKT TSTAQATPEK  60
KPQAKKPESA AAKPQSSSSG ETETESESES DGDTLAQRRV NVKPIASKPM EEVTRPPKAT  120
KPRSKPSASS PPATAKSGTK RPGGESELVK DSKKAKKKGD DPEEDGVEEE SKKSKLFQRL  180
WSDEDEIIIL KGMNEYKTKK GVDPYADMTA FHEFIKKSLK VDVTKIQLQD KIRRMRKKFE  240
NNVKKKHKPT KAHDSKTFKL SKKVWGGGEG GEDLTRQATI ASFGKGEQPK SNGKAKGNQK  300
SNSKTLAALK AELLASPETT KEDGKSEAEK SCASDSVLSE VIGFHKGFKE LGLSETIVKQ  360
GMELIGGSKR ADLEDRWSKL HVAELELFVQ RTELMRDQGK LILEAFKKSD H
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.13e-25GeBP family protein