PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0002354.1_g000016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 411aa MW: 44973.3 Da PI: 8.3824 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 107.3 | 1.1e-33 | 175 | 266 | 1 | 97 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskeh 84 klfqrlws+eDei++L+G+ ++k+k+g++p++d++af+ef+kks++++v+k ql +Kirr++kKf+++vkk + + +k+h Rmu_sc0002354.1_g000016.1 175 KLFQRLWSDEDEIIILKGMNEYKTKKGVDPYADMTAFHEFIKKSLKVDVTKIQLQDKIRRMRKKFENNVKK-----KHKPTKAH 253 579********************************************************************.....66789*** PP DUF573 85 dqkifelskkiWg 97 d+k+f+lskk+Wg Rmu_sc0002354.1_g000016.1 254 DSKTFKLSKKVWG 266 ************8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 411 aa Download sequence |
MAPKRPSPLD EPPAASSSEE EEEASSEEEG SGSESEESES DAEATEPQKT TSTAQATPEK 60 KPQAKKPESA AAKPQSSSSG ETETESESES DGDTLAQRRV NVKPIASKPM EEVTRPPKAT 120 KPRSKPSASS PPATAKSGTK RPGGESELVK DSKKAKKKGD DPEEDGVEEE SKKSKLFQRL 180 WSDEDEIIIL KGMNEYKTKK GVDPYADMTA FHEFIKKSLK VDVTKIQLQD KIRRMRKKFE 240 NNVKKKHKPT KAHDSKTFKL SKKVWGGGEG GEDLTRQATI ASFGKGEQPK SNGKAKGNQK 300 SNSKTLAALK AELLASPETT KEDGKSEAEK SCASDSVLSE VIGFHKGFKE LGLSETIVKQ 360 GMELIGGSKR ADLEDRWSKL HVAELELFVQ RTELMRDQGK LILEAFKKSD H |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G61730.1 | 3e-25 | GeBP family protein |