PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002312.1_g000012.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 1321aa MW: 149899 Da PI: 6.3521

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002312.1_g000012.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.7	9.4e-24	40	128	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 fYn+Y+ + GFs+r++++ k+k++ e+t+r fvC keg r++ k++ r++raetr gC+a+l +k+++ ++k+ vt++++e Rmu_sc0002312.1_g000012.1 40 FYNRYGGKEGFSIRRKSHAKNKKTSETTSRVFVCCKEGIRSKYKRD-YMIRKSRAETRPGCHAELYIKLNReNNKFFVTHFVEE 122 9***************************************9999.99*****************99******** PP FAR1 85 HnHela 90 HnH+l+ Rmu_sc0002312.1_g000012.1 123 HNHPLV 128 **96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1321 aa Download sequence
MDNALGATDV NVENFDFDLE LDWKPRKGME FDYEQAAYYF YNRYGGKEGF SIRRKSHAKN 60 KKTSETTSRV FVCCKEGIRS KYKRDYMIRK SRAETRPGCH AELYIKLNRE NNKFFVTHFV 120 EEHNHPLVVK ECSHMLPSQR KVQDCQGIDI DLAHDFGIGV TSLYELMGKQ AGGRDVVGYT 180 KQDVKNYLRS KRQRSLEYGE AGYIMKYFSD QTLENPSFYH AMQLDSEEQI TNLFWADAKM 240 IIDYGQFGDV VSFDTTYKIN KSNRPLVVFV GFNHHRETIV FGVALMYDET ADSFIWLFET 300 FFRAMSGKAP KTIFTDQDAA MAKALRHVMP DAYHRLCKWH MMQNAIKHGS SFLIEDGGIT 360 SILSRDTLTS DDPVIDDGSE ALVSAGSEFE LGFFSTTTGK RYVGIWYHKV TPRTVVWVAN 420 RAEPLPADST GVLTIEEGNL RVFDYVTRKR YWSTEIGKSS PFNKTVKIMD SGNLVLRDTG 480 ELTADPLWQS FQNPTDTFIP GMRMDSNLKL TSWSDEDDRR TGNYTFELDQ EGKSENQFTI 540 LNNSFRYWKS GEPGKYLSAD EMRPEVAYLL SNFSKNSSLY TTQPQFDYNY TRLVMNSTGV 600 LNGLTWNDTI KQWVVFFSAP KDQCSVINAC GNFGSCNVNN TPLVCKCLPG FNPQFLEKWK 660 YGDFSDGCKR QSSICGMKDT FLSIKVNKVG VWDSWTNVTS DTECENACLG DCKCQAYSSD 720 SSVNATARRD DLNITACYQW SKDLNDLVEE SGDNGKNLSA RVPVPDLEST TRDCSPCGTT 780 TIPYPLSTRK DCGDPMYLSF ACNASINEFS FLGPDGKSFR VINISRSTQR FIIKSKNMNY 840 CDSRNRVLNI SFPFKVISWC SSDQMRKFIS AIDSSSSPSV IEMGWEPPSE ANCTILDCRD 900 WPYSTCKTVR EGEKKCLCNT NFQWNGIDLN CTQEGNLQEL SNKSSTKKLL LSLVVVAVIS 960 GIFLACIIGF WIWRRKITNR RDQVSRPQLD SERRVKELID TRDFNEEDDK GIDVPFFDLQ 1020 SILDATDNFS IGNKLGQGGY GPVYKGIFPG GQEIAVKRLS RVSGQGLQEF KNEVVLIAKL 1080 QHRNLVRLRG YCMKGEEKIL LYEYMPNKSL DSFIFGLLYL HQDSRLRIIH RDLKTSNVLL 1140 DEEINPKISD FGLARIVGGK ETEANTNTVV GTYGYMSPEY ALDGNFSVKS DVFSFGVVLL 1200 EIISGKKNAG FYQSKQTFSL LSYTWGLWTE NKVLDLMDNN LEESCNRSEF IKCVNVGLLC 1260 VQEDPVDRPT MSNVVTLLDS ETAIPPTPKQ PAFFIRRGNS STASSSTKPE TYSEITTLEG 1320 R

Sequence ? help Back to Top

Protein Sequence Length: 1321 aa Download sequence

MDNALGATDV NVENFDFDLE LDWKPRKGME FDYEQAAYYF YNRYGGKEGF SIRRKSHAKN  60
KKTSETTSRV FVCCKEGIRS KYKRDYMIRK SRAETRPGCH AELYIKLNRE NNKFFVTHFV  120
EEHNHPLVVK ECSHMLPSQR KVQDCQGIDI DLAHDFGIGV TSLYELMGKQ AGGRDVVGYT  180
KQDVKNYLRS KRQRSLEYGE AGYIMKYFSD QTLENPSFYH AMQLDSEEQI TNLFWADAKM  240
IIDYGQFGDV VSFDTTYKIN KSNRPLVVFV GFNHHRETIV FGVALMYDET ADSFIWLFET  300
FFRAMSGKAP KTIFTDQDAA MAKALRHVMP DAYHRLCKWH MMQNAIKHGS SFLIEDGGIT  360
SILSRDTLTS DDPVIDDGSE ALVSAGSEFE LGFFSTTTGK RYVGIWYHKV TPRTVVWVAN  420
RAEPLPADST GVLTIEEGNL RVFDYVTRKR YWSTEIGKSS PFNKTVKIMD SGNLVLRDTG  480
ELTADPLWQS FQNPTDTFIP GMRMDSNLKL TSWSDEDDRR TGNYTFELDQ EGKSENQFTI  540
LNNSFRYWKS GEPGKYLSAD EMRPEVAYLL SNFSKNSSLY TTQPQFDYNY TRLVMNSTGV  600
LNGLTWNDTI KQWVVFFSAP KDQCSVINAC GNFGSCNVNN TPLVCKCLPG FNPQFLEKWK  660
YGDFSDGCKR QSSICGMKDT FLSIKVNKVG VWDSWTNVTS DTECENACLG DCKCQAYSSD  720
SSVNATARRD DLNITACYQW SKDLNDLVEE SGDNGKNLSA RVPVPDLEST TRDCSPCGTT  780
TIPYPLSTRK DCGDPMYLSF ACNASINEFS FLGPDGKSFR VINISRSTQR FIIKSKNMNY  840
CDSRNRVLNI SFPFKVISWC SSDQMRKFIS AIDSSSSPSV IEMGWEPPSE ANCTILDCRD  900
WPYSTCKTVR EGEKKCLCNT NFQWNGIDLN CTQEGNLQEL SNKSSTKKLL LSLVVVAVIS  960
GIFLACIIGF WIWRRKITNR RDQVSRPQLD SERRVKELID TRDFNEEDDK GIDVPFFDLQ  1020
SILDATDNFS IGNKLGQGGY GPVYKGIFPG GQEIAVKRLS RVSGQGLQEF KNEVVLIAKL  1080
QHRNLVRLRG YCMKGEEKIL LYEYMPNKSL DSFIFGLLYL HQDSRLRIIH RDLKTSNVLL  1140
DEEINPKISD FGLARIVGGK ETEANTNTVV GTYGYMSPEY ALDGNFSVKS DVFSFGVVLL  1200
EIISGKKNAG FYQSKQTFSL LSYTWGLWTE NKVLDLMDNN LEESCNRSEF IKCVNVGLLC  1260
VQEDPVDRPT MSNVVTLLDS ETAIPPTPKQ PAFFIRRGNS STASSSTKPE TYSEITTLEG  1320
R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-73	FAR1 family protein