PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002283.1_g000033.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 845aa MW: 98028.1 Da PI: 8.7747

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002283.1_g000033.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.2	8.6e-16	40	123	4	91
FAR1 4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 ++Y+k++GF vrk++s+k ++g+++ t C + gk +++++ + +++++ +t+Cka +++ k dgkw++++ +leHnH Rmu_sc0002283.1_g000033.1 40 RKYGKQLGFPVRKRTSRKG-DDGSTKYLTISCGRAGKFISKSSN---SLKPHPNVKTDCKALIRLGKCLDGKWKINSTKLEHNH 119 68**********99998.8999*********9998887...899******************************** PP FAR1 88 elap 91 l+p Rmu_sc0002283.1_g000033.1 120 GLSP 123 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 845 aa Download sequence
MDDSSKSLEN NQDSEVEEKM QEPSVEMSFD SIDEAYDYSR KYGKQLGFPV RKRTSRKGDD 60 GSTKYLTISC GRAGKFISKS SNSLKPHPNV KTDCKALIRL GKCLDGKWKI NSTKLEHNHG 120 LSPRKSCYFA VNRELSSSIK RRLELNDVAR IGLNKSYNSI VVEAHGYENV PFLEKDARNH 180 IEKIRRLRLK EGDATAVQTY FLDMQAKNAS FFYAIDINEK GRLRNLFWAD ARSRAAYQEF 240 GDVVTFDTTY LTNKYEIPFA PFVGVNHHGQ SILLGCGLIS SEDTETFVWL FKSWLACMSG 300 NAPNGIITDQ DRAMKNAIEI VFPNTRHRWC LWHILKKIPE KLKGYTEYES LSMTLLNTVY 360 DSLSRVEFEE RWDEMIKKYK LHENDWLNVM YQERNRWVPS FVKDCFWAGM STTQRNESMN 420 SFFDGHVNSK TTLKQFVEQY ENALRSKVEK ENHEDFKCFS YSLPGATHYD MEKQAHDIYT 480 TSKFKEFRDE LTGKMYCDFI SVEVDNSILQ YIVSEDIKIG EMKKTTHFHV SFNEENDEVN 540 CNCCLFQFRG ILCRHAIYVL IRHKKNMIPD KYILRRWRKD VKRCHTRVKI SYGGWDARPE 600 SQRLDKMQKN FDDIKELAYD SEDKCMIVMT WLHTLKDELS KHESKNASAC GGTEPMSSSP 660 INRYRSNVDG ISNIPSQHIL TPLVNKRKGR PPSKRKVSKV EEAVRKKQKR EQKNKRGGNN 720 TNEEVGVKGS RSRGRLPLKR NESKKEQEQE SMCIPSSMHQ LLVFWNGDTV EVVEADSQPL 780 KGSANAIDAQ YYEEEIRCSE IRRQDGTGRI TRITMRRTLA LGVEKVHEDS ERLALADLFD 840 PIIYG

Sequence ? help Back to Top

Protein Sequence Length: 845 aa Download sequence

MDDSSKSLEN NQDSEVEEKM QEPSVEMSFD SIDEAYDYSR KYGKQLGFPV RKRTSRKGDD  60
GSTKYLTISC GRAGKFISKS SNSLKPHPNV KTDCKALIRL GKCLDGKWKI NSTKLEHNHG  120
LSPRKSCYFA VNRELSSSIK RRLELNDVAR IGLNKSYNSI VVEAHGYENV PFLEKDARNH  180
IEKIRRLRLK EGDATAVQTY FLDMQAKNAS FFYAIDINEK GRLRNLFWAD ARSRAAYQEF  240
GDVVTFDTTY LTNKYEIPFA PFVGVNHHGQ SILLGCGLIS SEDTETFVWL FKSWLACMSG  300
NAPNGIITDQ DRAMKNAIEI VFPNTRHRWC LWHILKKIPE KLKGYTEYES LSMTLLNTVY  360
DSLSRVEFEE RWDEMIKKYK LHENDWLNVM YQERNRWVPS FVKDCFWAGM STTQRNESMN  420
SFFDGHVNSK TTLKQFVEQY ENALRSKVEK ENHEDFKCFS YSLPGATHYD MEKQAHDIYT  480
TSKFKEFRDE LTGKMYCDFI SVEVDNSILQ YIVSEDIKIG EMKKTTHFHV SFNEENDEVN  540
CNCCLFQFRG ILCRHAIYVL IRHKKNMIPD KYILRRWRKD VKRCHTRVKI SYGGWDARPE  600
SQRLDKMQKN FDDIKELAYD SEDKCMIVMT WLHTLKDELS KHESKNASAC GGTEPMSSSP  660
INRYRSNVDG ISNIPSQHIL TPLVNKRKGR PPSKRKVSKV EEAVRKKQKR EQKNKRGGNN  720
TNEEVGVKGS RSRGRLPLKR NESKKEQEQE SMCIPSSMHQ LLVFWNGDTV EVVEADSQPL  780
KGSANAIDAQ YYEEEIRCSE IRRQDGTGRI TRITMRRTLA LGVEKVHEDS ERLALADLFD  840
PIIYG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	690	700	RPPSKRKVSKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-122	FAR1 family protein