PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002279.1_g000014.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 521aa MW: 60703.1 Da PI: 8.4951

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002279.1_g000014.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.5	7.1e-21	17	101	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 fYn+YAke+GFs+ ++s ++k+n++ +++++vC+k+g+++ e k +r+ ++gCka++ ++k +g++ ++ +++ Rmu_sc0002279.1_g000014.1 17 FYNRYAKEAGFSIISHSSATNKDNTQLMRNEYVCYKQGTSKVEGGK-----CKRELLKVGCKARIAAVRKKvSGRYAISVFVEG 95 9************************************9998877.....99********8666666******** PP FAR1 85 HnHela 90 HnH+l+ Rmu_sc0002279.1_g000014.1 96 HNHPLT 101 **97 PP

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence
MPILHQEFET IDDVAAFYNR YAKEAGFSII SHSSATNKDN TQLMRNEYVC YKQGTSKVEG 60 GKCKRELLKV GCKARIAAVR KKVSGRYAIS VFVEGHNHPL TSPPRVHLLR SHHRVSKVNT 120 VQSQQLSLVN VQKHTQFEFF GVQADGIENI GCTQRDLYNY GRTCREAKKG HDGDLLYMHF 180 QNEKEKDLSL IYTMESNEEN RVTRCFWADS ISKRAYNFYG DVVIFDTTYN TNRYGMIFAP 240 FTGELLNAML GNAPENAPKM IITDQDLAMT KAISEALPQT FHRYCSWHIL NKFSEKLDAI 300 KYWDCYRDFH SCTWNSSSRE EFDSRWIEIT EKSGLSDNKW LKSIYEICSS WILAHVNHVL 360 SAGMSSSQRA ESQHSFFKNY VSNQNSLVEF MVQIKRGLLH QRHYELEEDH INIDEKPKTV 420 MSLDIEDHMA KVYTRKLFYE VQEQLKERFK YKLELLRENV TPCVFKVVRK NTNTCKSREL 480 IYEKAYDFAS CSSRKIESER LPCRHVLSYL IKIQDVGKLP I

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence

MPILHQEFET IDDVAAFYNR YAKEAGFSII SHSSATNKDN TQLMRNEYVC YKQGTSKVEG  60
GKCKRELLKV GCKARIAAVR KKVSGRYAIS VFVEGHNHPL TSPPRVHLLR SHHRVSKVNT  120
VQSQQLSLVN VQKHTQFEFF GVQADGIENI GCTQRDLYNY GRTCREAKKG HDGDLLYMHF  180
QNEKEKDLSL IYTMESNEEN RVTRCFWADS ISKRAYNFYG DVVIFDTTYN TNRYGMIFAP  240
FTGELLNAML GNAPENAPKM IITDQDLAMT KAISEALPQT FHRYCSWHIL NKFSEKLDAI  300
KYWDCYRDFH SCTWNSSSRE EFDSRWIEIT EKSGLSDNKW LKSIYEICSS WILAHVNHVL  360
SAGMSSSQRA ESQHSFFKNY VSNQNSLVEF MVQIKRGLLH QRHYELEEDH INIDEKPKTV  420
MSLDIEDHMA KVYTRKLFYE VQEQLKERFK YKLELLRENV TPCVFKVVRK NTNTCKSREL  480
IYEKAYDFAS CSSRKIESER LPCRHVLSYL IKIQDVGKLP I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-71	FAR1 family protein