PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002268.1_g000017.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 347aa MW: 39982.4 Da PI: 8.7258

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002268.1_g000017.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68	2.4e-21	56	148	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 +fYn+YAk +GF+vr+++++ s +++g++t+ ++vCs +gkr+ee + +++ rr+++etr +C + +kv+ ++ + + v+++ Rmu_sc0002268.1_g000017.1 56 SFYNAYAKAMGFDVRNDYKRLSiRTTGRVTSLRLVCSAQGKRREEYMSnKKRVRRPKKETRFSCPCLFKVRYRSnINAYIVDDF 139 5****************999999**************9988845677889*************9899*** PP FAR1 82 eleHnHela 90 ++H+H+la Rmu_sc0002268.1_g000017.1 140 ITNHSHQLA 148 *****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MDGSYEPSIS DIGLVSQSSI NGSDCNEMQY KGVRYDKLST EDLKGQMFKT VEEAESFYNA 60 YAKAMGFDVR NDYKRLSIRT TGRVTSLRLV CSAQGKRREE YMSNKKRVRR PKKETRFSCP 120 CLFKVRYRSN INAYIVDDFI TNHSHQLAQA HESHLLRSHR SVEDHHLALA TSMQRVSVKP 180 CHTYEYIVDR SGEAALAYMR GKVATDSHFY CKFSIDEDNR LANMFWRDSN SLVDYTCFGD 240 VLVFDSTYKT NPYEKPLVLF VGSNNHLSTT VFGFALLMDE TIETYTWVLE TFISSMNNKR 300 PVAVLTDGDE AMRRAIEVVL PGCPHRLCTW HIAKNARRHL RKNSVLF

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MDGSYEPSIS DIGLVSQSSI NGSDCNEMQY KGVRYDKLST EDLKGQMFKT VEEAESFYNA  60
YAKAMGFDVR NDYKRLSIRT TGRVTSLRLV CSAQGKRREE YMSNKKRVRR PKKETRFSCP  120
CLFKVRYRSN INAYIVDDFI TNHSHQLAQA HESHLLRSHR SVEDHHLALA TSMQRVSVKP  180
CHTYEYIVDR SGEAALAYMR GKVATDSHFY CKFSIDEDNR LANMFWRDSN SLVDYTCFGD  240
VLVFDSTYKT NPYEKPLVLF VGSNNHLSTT VFGFALLMDE TIETYTWVLE TFISSMNNKR  300
PVAVLTDGDE AMRRAIEVVL PGCPHRLCTW HIAKNARRHL RKNSVLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-51	FAR1 family protein