PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002207.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 273aa    MW: 30575 Da    PI: 4.6081
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002207.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.6e-181461148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT+eEd  lv +++q+G g+W++ ++  g+ R++k+c++rw +yl
  Rmu_sc0002207.1_g000004.1 14 KGPWTPEEDHVLVSYIQQYGHGNWRALPKLAGLLRCGKSCRLRWTNYL 61
                               79******************************99************97 PP
2Myb_DNA-binding52.21.4e-1667112148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                rg+++ eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  Rmu_sc0002207.1_g000004.1  67 RGNFSREEEEAIINLHQMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                                89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MVRAPCCEKM GLKKGPWTPE EDHVLVSYIQ QYGHGNWRAL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF SREEEEAIIN LHQMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKKLSIKQ  120
NSTTPEAQGQ ESEPEPKPEN TSCYAKSESF EYGPVSPPQC TTSSADDTSS FTTSENNTCS  180
ANMGMKVDYE MNLPQADESF WSEVLSADQN CSNETVSCDF DQAIGAAADP QVNATVEVPV  240
DFGFSGSNMY DNCMDFWYNV FTTAGEISEL LEI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-82MYB family protein