PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002206.1_g000012.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 393aa MW: 45968.1 Da PI: 8.2228

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002206.1_g000012.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.6	1.6e-21	35	124	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +f+++Y+ + GF vrk + +ks+ +g++t+ +fvCskeg+r ++k++ + ++++raetrt+C +l ++ ++ ++k+ev+++++ Rmu_sc0002206.1_g000012.1 35 QFWRTYGGRPGFGVRKLYANKSRIDGQTTTVRFVCSKEGHRVPDKRD-HLTKNPRAETRTNCLVRLGLQFNReSSKFEVHDFVH 117 69****************************************999.99***************9998******* PP FAR1 84 eHnHela 90 eHnH l Rmu_sc0002206.1_g000012.1 118 EHNHLLH 124 **985 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MDDSTTSNLD EGINKSLDWI PRIGMQFDTV DAAFQFWRTY GGRPGFGVRK LYANKSRIDG 60 QTTTVRFVCS KEGHRVPDKR DHLTKNPRAE TRTNCLVRLG LQFNRESSKF EVHDFVHEHN 120 HLLHTPETCH MIPSQRNLTD SQAIHIDFAD DSGLKPKAAH QFFSQQVGGK ENLGYTERDQ 180 KNYLRSKRQK DMAYGEAGSL LRYLHNQSSE SFKWLFQTFL EAHKQKKPKT IFTDQDPAMA 240 KALAEVLPDT FHGLCSWHTM QNGIKHLGYL MKDGSFFLTD FAACMYEHEE EKEFEDAWND 300 MLCKYNVCSN PWLEKIYEIK EKWAKCYMKK VFTIGMRSTQ LIESLNSDLK AYLKSDMDIM 360 RFLKQFERVA NEKHYKDLEA EYNSRQKPPR VHV

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MDDSTTSNLD EGINKSLDWI PRIGMQFDTV DAAFQFWRTY GGRPGFGVRK LYANKSRIDG  60
QTTTVRFVCS KEGHRVPDKR DHLTKNPRAE TRTNCLVRLG LQFNRESSKF EVHDFVHEHN  120
HLLHTPETCH MIPSQRNLTD SQAIHIDFAD DSGLKPKAAH QFFSQQVGGK ENLGYTERDQ  180
KNYLRSKRQK DMAYGEAGSL LRYLHNQSSE SFKWLFQTFL EAHKQKKPKT IFTDQDPAMA  240
KALAEVLPDT FHGLCSWHTM QNGIKHLGYL MKDGSFFLTD FAACMYEHEE EKEFEDAWND  300
MLCKYNVCSN PWLEKIYEIK EKWAKCYMKK VFTIGMRSTQ LIESLNSDLK AYLKSDMDIM  360
RFLKQFERVA NEKHYKDLEA EYNSRQKPPR VHV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	3e-29	FAR1 family protein