PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002200.1_g000013.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 442aa MW: 51018.4 Da PI: 8.8919

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002200.1_g000013.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.5	1.9e-17	34	118	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklk.vkkekdgkwevtklele 84 fYn+YAke+GFs++ ++s ++k+n++ +++++v +k+g+++ e +k r+r ++gCka++ v+k+++g++ ++ + + Rmu_sc0002200.1_g000013.1 34 FYNRYAKEAGFSIKSHSSATNKDNTQLMRKEYVYYKQGTSKVEGEK-----RKRGLPKVGCKARIAaVRKMESGRYAISAFFEG 112 *************************************9998877.....999******96377888******** PP FAR1 85 HnHela 90 Hn +l+ Rmu_sc0002200.1_g000013.1 113 HNYPLT 118 9996 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MESEDDHVYI TQVKAELMPI LHQEFETIDD VAAFYNRYAK EAGFSIKSHS SATNKDNTQL 60 MRKEYVYYKQ GTSKVEGEKR KRGLPKVGCK ARIAAVRKME SGRYAISAFF EGHNYPLTSP 120 PRVHLLRSHL LVSKFNTVLS QHLSLVNVQK HTQFEFFGVQ AGDIENIGCT QRDLYNYRRT 180 CHEAKKGHDG DLLYMHFQNE KEKDPSFVYT MESDEENRVP RCFWADSISR RAYSFYGDVV 240 IFESTYNTNR KFESEWLPCR HVLSYLIKIQ DVDKLPIQSI IKIQDVDKLP IQYILKRWIK 300 AARQSLVLDS YEMEVKDNKA LLGRRTKLFQ HAADAIDKAK VSDEASQLFM ECLDAFLENI 360 KTLIGNESGQ SVVVLETKID DIQHIFNEPN QVKAKGCGKR LKKGKEKRKV KVKESQGRQC 420 HGCGLLVSHM TKEIVQHCIN CV

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MESEDDHVYI TQVKAELMPI LHQEFETIDD VAAFYNRYAK EAGFSIKSHS SATNKDNTQL  60
MRKEYVYYKQ GTSKVEGEKR KRGLPKVGCK ARIAAVRKME SGRYAISAFF EGHNYPLTSP  120
PRVHLLRSHL LVSKFNTVLS QHLSLVNVQK HTQFEFFGVQ AGDIENIGCT QRDLYNYRRT  180
CHEAKKGHDG DLLYMHFQNE KEKDPSFVYT MESDEENRVP RCFWADSISR RAYSFYGDVV  240
IFESTYNTNR KFESEWLPCR HVLSYLIKIQ DVDKLPIQSI IKIQDVDKLP IQYILKRWIK  300
AARQSLVLDS YEMEVKDNKA LLGRRTKLFQ HAADAIDKAK VSDEASQLFM ECLDAFLENI  360
KTLIGNESGQ SVVVLETKID DIQHIFNEPN QVKAKGCGKR LKKGKEKRKV KVKESQGRQC  420
HGCGLLVSHM TKEIVQHCIN CV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-29	FAR1 family protein