PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002113.1_g000006.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 857aa MW: 97639.3 Da PI: 6.028

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002113.1_g000006.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.9	9.4e-25	76	161	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +Yn+YAk vGF+vrk+ ++sk +g++++r+f+Cskeg+r+++k++ ++ +++r+etrtgC a+++++++ dgk++v+++e++H Rmu_sc0002113.1_g000006.1 76 CYNKYAKLVGFNVRKDWVNRSKVHGQVVSRKFTCSKEGYRRRDKRD-VTVKKHRKETRTGCLAHMVITRQPDGKYRVSHIEEQH 158 7****************************************999.999****************************** PP FAR1 86 nHe 88 nH+ Rmu_sc0002113.1_g000006.1 159 NHD 161 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 857 aa Download sequence
MERGEGDFIS IVEESIDFGV ETNNSLDLNV EQDCHNPKIV HGNGTVSNVS STNDHSVDAV 60 VKVGTEFESD EHAYRCYNKY AKLVGFNVRK DWVNRSKVHG QVVSRKFTCS KEGYRRRDKR 120 DVTVKKHRKE TRTGCLAHMV ITRQPDGKYR VSHIEEQHNH DNVNASTAQV LPLHRESSIS 180 QAADAELVEG TKDFRTLSKL ASESMNRRFR VRESLNNVSI GYNNHLQSER TRDMKKGEVG 240 RLLHYFQRQH VENPSFFYAL QVDTDDKVCN IFWADDKMVS DYDYFGDLVC LDTICRADKN 300 CLPFVQFIGV NHHKQVLIFA AALLYDDTME SYKWLFQTFL EAMSGKKPRT ILTDQDATIV 360 EAIDSVLPET DHRICTWQMY ENALKHISPM VNDTGSFAND FKRCIYDHKD EDDFVSAWGD 420 MLDKYGLQQN DWLKWMFRAR EKWAVVNGRN TIFVDKGTHL VESLFNDLRS YLYSDTTVVQ 480 FFKHFERVVD EQRSKEIEAS DEMNSCLPRL MGNVVMLKHA STVYTSRAFE VFQQGYEKCL 540 NVVVNQCSEN GSLFEYRAKT FGKTQEHSVI FCSSDGTVIC SCKKFESVGF LCSHALKVLD 600 HRNIKVLPAN YVLKRWTKDA RLGIARPSDV STVNDNPKLI VASRYKDLSH RILMLSTRAS 660 ESGEAFQYAV RQLDQVMDGV EKILTLKPED AQAVTSSSTG TTTSDNEHAE TFLDENAFEN 720 QGENGVEGAN EQGSAVLDRG ELMNVNGNFS STNRIHISDV SPQSNHSYIS SEPLTGNPIT 780 QGLYTFEENP VVNCTYAQDN AILFRPPNIF PNQHDSPSQL QLLQEPLING TYQEPISELR 840 QAMDLDLHPP HSPSFLL

Sequence ? help Back to Top

Protein Sequence Length: 857 aa Download sequence

MERGEGDFIS IVEESIDFGV ETNNSLDLNV EQDCHNPKIV HGNGTVSNVS STNDHSVDAV  60
VKVGTEFESD EHAYRCYNKY AKLVGFNVRK DWVNRSKVHG QVVSRKFTCS KEGYRRRDKR  120
DVTVKKHRKE TRTGCLAHMV ITRQPDGKYR VSHIEEQHNH DNVNASTAQV LPLHRESSIS  180
QAADAELVEG TKDFRTLSKL ASESMNRRFR VRESLNNVSI GYNNHLQSER TRDMKKGEVG  240
RLLHYFQRQH VENPSFFYAL QVDTDDKVCN IFWADDKMVS DYDYFGDLVC LDTICRADKN  300
CLPFVQFIGV NHHKQVLIFA AALLYDDTME SYKWLFQTFL EAMSGKKPRT ILTDQDATIV  360
EAIDSVLPET DHRICTWQMY ENALKHISPM VNDTGSFAND FKRCIYDHKD EDDFVSAWGD  420
MLDKYGLQQN DWLKWMFRAR EKWAVVNGRN TIFVDKGTHL VESLFNDLRS YLYSDTTVVQ  480
FFKHFERVVD EQRSKEIEAS DEMNSCLPRL MGNVVMLKHA STVYTSRAFE VFQQGYEKCL  540
NVVVNQCSEN GSLFEYRAKT FGKTQEHSVI FCSSDGTVIC SCKKFESVGF LCSHALKVLD  600
HRNIKVLPAN YVLKRWTKDA RLGIARPSDV STVNDNPKLI VASRYKDLSH RILMLSTRAS  660
ESGEAFQYAV RQLDQVMDGV EKILTLKPED AQAVTSSSTG TTTSDNEHAE TFLDENAFEN  720
QGENGVEGAN EQGSAVLDRG ELMNVNGNFS STNRIHISDV SPQSNHSYIS SEPLTGNPIT  780
QGLYTFEENP VVNCTYAQDN AILFRPPNIF PNQHDSPSQL QLLQEPLING TYQEPISELR  840
QAMDLDLHPP HSPSFLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-102	FAR1 family protein