PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002079.1_g000009.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 644aa MW: 73851.2 Da PI: 8.2317

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002079.1_g000009.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.4	1.7e-21	246	342	2	90
FAR1 2 fYne.YAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwe 77 fYne YAk vGFsvr+ ++k+sk +geit+++f Cskegk++e+ ++ ++ e+r+ +r+ Cka+l++ +k ++kw+ Rmu_sc0002079.1_g000009.1 246 FYNEiYAKAVGFSVRMGSTKRSKVTGEITWKQFLCSKEGKTDETYENskrqhsSTMEERNCGIKRMACKARLNIVFNKaSKKWC 329 88866***********************************999987777776777778899*******99999* PP FAR1 78 vtkleleHnHela 90 ++++++ H+Hel+ Rmu_sc0002079.1_g000009.1 330 ISDFKEAHTHELT 342 *********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence
MSVWNLLREF RIRKVHMTVV LNEYGGTVGI ITLQAVVEEI VGEIFDENDS KEEIQKKTGY 60 IVMRAEGVFD VDANASIDQL SEDLNVKMPE CGVVLAAMVC GVLVYGSRRA FAVKGVVNAS 120 YGVVDKCMLM FRNAWPKTLL VLQVFKEQGL ILAALLGLSA FFSMAETSIT TLWPWKVREL 180 AGKEPENGVF GLLRNDVTRF LATILIGTTF MMGEPLLQEP NENVVVDEPK LQLGQEFESI 240 EEAYYFYNEI YAKAVGFSVR MGSTKRSKVT GEITWKQFLC SKEGKTDETY ENSKRQHSST 300 MEERNCGIKR MACKARLNIV FNKASKKWCI SDFKEAHTHE LTTPKRVHLL PSHRKLTKAK 360 KCLMEKLSSV NVRTSQQFKI METVAGGIQN VGCIVRDLRN FERDSREEVK GHDATMLLEY 420 LESEKEKKPS FYFEVDRDEE NRLNRSFWAD PTSKKAYYFF NDVVVFDTTY NTNKYRMIFA 480 PITGVNHHGQ TIVFGCGLLS DEKTESFIWL LEQWLKAMPS GPPKVIITDQ DPAIAKAIAQ 540 VLPLTLHRFC LWHIMFKFRD KLGPVIAQSY YGLFKASVYN SKTKEEFEAS WKNAVQQSKQ 600 ENHAWLNTMY ELRSKWIPAF CNHIFHAGER ACQNVYVLFN FMFQ

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence

MSVWNLLREF RIRKVHMTVV LNEYGGTVGI ITLQAVVEEI VGEIFDENDS KEEIQKKTGY  60
IVMRAEGVFD VDANASIDQL SEDLNVKMPE CGVVLAAMVC GVLVYGSRRA FAVKGVVNAS  120
YGVVDKCMLM FRNAWPKTLL VLQVFKEQGL ILAALLGLSA FFSMAETSIT TLWPWKVREL  180
AGKEPENGVF GLLRNDVTRF LATILIGTTF MMGEPLLQEP NENVVVDEPK LQLGQEFESI  240
EEAYYFYNEI YAKAVGFSVR MGSTKRSKVT GEITWKQFLC SKEGKTDETY ENSKRQHSST  300
MEERNCGIKR MACKARLNIV FNKASKKWCI SDFKEAHTHE LTTPKRVHLL PSHRKLTKAK  360
KCLMEKLSSV NVRTSQQFKI METVAGGIQN VGCIVRDLRN FERDSREEVK GHDATMLLEY  420
LESEKEKKPS FYFEVDRDEE NRLNRSFWAD PTSKKAYYFF NDVVVFDTTY NTNKYRMIFA  480
PITGVNHHGQ TIVFGCGLLS DEKTESFIWL LEQWLKAMPS GPPKVIITDQ DPAIAKAIAQ  540
VLPLTLHRFC LWHIMFKFRD KLGPVIAQSY YGLFKASVYN SKTKEEFEAS WKNAVQQSKQ  600
ENHAWLNTMY ELRSKWIPAF CNHIFHAGER ACQNVYVLFN FMFQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-80	FAR1 family protein