PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002045.1_g000037.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

RAV

Protein Properties

Length: 722aa MW: 84384.2 Da PI: 9.0979

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002045.1_g000037.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	38.4	3.2e-12	21	69	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f +eeAaka++ a ++++g Rmu_sc0002045.1_g000037.1 21 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFKGEEEAAKAYDIASQRFRG 69 78**9888.8*****3.....5*******************999987 PP
2	B3	87.9	8e-28	146	233	1	85
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+kvltpsdv++++r+v+pk+ ae+h + +++++ l +ed g++W+++++++ +s++yvltkGW +Fvk+++Lk gD++ Rmu_sc0002045.1_g000037.1 146 FEKVLTPSDVGRLNRFVIPKQQAEKHfplMDSEAKGALLNFEDDLGNVWRFRYCFWSSSRSYVLTKGWTRFVKEKKLKGGDVIR 229 99*************************8888999********************************************** PP EEE- CS B3 82 Fkld 85 F+ + Rmu_sc0002045.1_g000037.1 230 FHGS 233 *944 PP

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence
MDLMSSFNEN ASDSNSKLPS SRYKGVVPQP NGRWGAQIYE KHQRVWLGTF KGEEEAAKAY 60 DIASQRFRGL DAITNFKQSS WSATIDDHED DAFFLQSHSK AEIVDMLRKH SYTNELELFK 120 HKNRGKRIKY RNIDLMDIHI QKEWLFEKVL TPSDVGRLNR FVIPKQQAEK HFPLMDSEAK 180 GALLNFEDDL GNVWRFRYCF WSSSRSYVLT KGWTRFVKEK KLKGGDVIRF HGSIMGEDKK 240 LFIECGPRNI DDEVSGFRER TGTVDEPLMA PGRDHDRVDF DPGWRAFRRW GGWWRQSLVP 300 RWVSVGGLDL NCGPRMLYAV VSIGEWWWRT GVVGVLLFES FRWFRSSMAL RFYQAAVLVW 360 KTDGGRLAWW KEPEARSWQR YAMDRMALTS TLRCVARRRR QLWWIWAIKL VGMAAARYDN 420 FFTDFSVIEL VWLTAWYHRL GVLEDIELRW WHAGRVPDDK EEEYCRNVSL FLFRVLFLGW 480 VKLMCHGGGV FPGDELIYFR FYLMVNVLTS DPCTWSGFIG MWCGRGRCWL GVELFWLMEV 540 ILDDGPDFDP GWRAFRRWGG WWRQSLVPRW VSVGGLDLNC GPRMLYAVVS IGEWWWRTGV 600 VGSGGMVLML CWWQSSCWQW WKVGGRLGGG ETDSEQLVRG GLLRFMSDVR EVAGVHTTST 660 TKSNGRPVLV SWQKDMVCDC LILFVIRFRF LSSLVSISPY FEFGLFPYSL ELRLGLVIMP 720 CK

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence

MDLMSSFNEN ASDSNSKLPS SRYKGVVPQP NGRWGAQIYE KHQRVWLGTF KGEEEAAKAY  60
DIASQRFRGL DAITNFKQSS WSATIDDHED DAFFLQSHSK AEIVDMLRKH SYTNELELFK  120
HKNRGKRIKY RNIDLMDIHI QKEWLFEKVL TPSDVGRLNR FVIPKQQAEK HFPLMDSEAK  180
GALLNFEDDL GNVWRFRYCF WSSSRSYVLT KGWTRFVKEK KLKGGDVIRF HGSIMGEDKK  240
LFIECGPRNI DDEVSGFRER TGTVDEPLMA PGRDHDRVDF DPGWRAFRRW GGWWRQSLVP  300
RWVSVGGLDL NCGPRMLYAV VSIGEWWWRT GVVGVLLFES FRWFRSSMAL RFYQAAVLVW  360
KTDGGRLAWW KEPEARSWQR YAMDRMALTS TLRCVARRRR QLWWIWAIKL VGMAAARYDN  420
FFTDFSVIEL VWLTAWYHRL GVLEDIELRW WHAGRVPDDK EEEYCRNVSL FLFRVLFLGW  480
VKLMCHGGGV FPGDELIYFR FYLMVNVLTS DPCTWSGFIG MWCGRGRCWL GVELFWLMEV  540
ILDDGPDFDP GWRAFRRWGG WWRQSLVPRW VSVGGLDLNC GPRMLYAVVS IGEWWWRTGV  600
VGSGGMVLML CWWQSSCWQW WKVGGRLGGG ETDSEQLVRG GLLRFMSDVR EVAGVHTTST  660
TKSNGRPVLV SWQKDMVCDC LILFVIRFRF LSSLVSISPY FEFGLFPYSL ELRLGLVIMP  720
CK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	624	630	GGRLGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25560.1	1e-87	RAV family protein