PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001901.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 863aa    MW: 98163.1 Da    PI: 9.906
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001901.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.34.8e-10237282246
                                SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqk 46 
                                g+WTt+Ed+ ++ +v++  g  +W+ Ia+ +g++Rt+ qc  r+q 
  Rmu_sc0001901.1_g000001.1 237 GPWTTDEDKTILYLVQKKNGVnDWNNIAEAVGTNRTPFQCLARYQR 282
                                89*************8765436**********************96 PP
2Myb_DNA-binding461.2e-14291334246
                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                  WT++Ed +l+ av+ +G g+W ++a+ ++ gRt+ qc +rw k
  Rmu_sc0001901.1_g000001.1 291 REWTKDEDAKLASAVEAFGEGNWQSVASALN-GRTGTQCSNRWKK 334
                                68*****************************.***********98 PP
3Myb_DNA-binding43.38.6e-14344387246
                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                g+WT+eEd++l+ a  ++G+++W++ a+ ++ gRt  qc++r+ +
  Rmu_sc0001901.1_g000001.1 344 GKWTPEEDKRLIVAQMLFGSKSWNKTAQFVP-GRTQAQCRDRYVN 387
                                79*****************************.***********77 PP
4Myb_DNA-binding47.93.1e-15396439247
                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                g WT+eEd +l+ a++++G   W+++a++++ +Rt+++c  rw  +
  Rmu_sc0001901.1_g000001.1 396 GEWTEEEDSRLIAAIEEYGHC-WSKVAACVP-HRTDNMCWRRWKVL 439
                                78*****************99.*********.***********865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 863 aa     Download sequence    
EWVQSDSCEP TLLPTKSSAF PKSALAFLDA INKNRSCQKF LRSKLIQIQA KIEENNKLKQ  60
RVKILRDFQA HCKRRTGEAL SQKKDPRVQL ILTKKPRADS KAHDRAISAM SYGPEENSHV  120
ANYRKASTKF PLSLDRKNWS EVEKKDLQNG IRQQFQEMVL QSSVDDSSYS ETPDGDSNDI  180
DKILASIKDL EITPYSIREF LPKVNWEQLA SMYVPGRSGG ECEARWLNWE DPLISHGPWT  240
TDEDKTILYL VQKKNGVNDW NNIAEAVGTN RTPFQCLARY QRSLNASILK REWTKDEDAK  300
LASAVEAFGE GNWQSVASAL NGRTGTQCSN RWKKSLHPTR TRAGKWTPEE DKRLIVAQML  360
FGSKSWNKTA QFVPGRTQAQ CRDRYVNSLE PSLRCGEWTE EEDSRLIAAI EEYGHCWSKV  420
AACVPHRTDN MCWRRWKVLF PDEVPLLREE KRIRKTALIR NFVDREKERP ALGPNDFLLQ  480
DVTSMKTLTY PRKTGGLSQV PKKIKPRRHR NDAQLCSEEE PGTSNSEVET YDGEDASKKK  540
KKKKVLKQRQ RRHKDNEPTG DCAAVVPVPK KIRPRRNRNN GQIPGISNSE VRTCDGDDGP  600
KKKKVLKQRH RRHKGTELTG ECTAIVPVSN EDDAHKEPTE MSCSDALKKK KVLKHRHRKH  660
RGTEPTGECK AIVPGSNEDD ARKEPTAMSY SDQIIGTSDE DDTVSYYLHK SRKRKLEADL  720
AVQESPFYCI RDREALMQHE PAIACNKPGR RKLVRGQKLG LQEPMRGVLR ICPGSDHETG  780
DPVVASTGKK NSKKRHAQTT KRHVICNDHD AGDLPKQEEV TIKSGKEQVS AGADSGDDIT  840
LACFLNRLKK RRESGRGDIQ MPR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1538544KKKKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.21e-175MYB family protein