PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001878.1_g000008.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YA
Protein Properties Length: 341aa    MW: 38308.1 Da    PI: 10.6255
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001878.1_g000008.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.77.2e-32171227158
                  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                +ep++VNaKQy++Il+RRq+Rak+e+e+k   ksrkpylheSRh hAlrR+Rg+gGrF
  Rmu_sc0001878.1_g000008.1 171 EEPVFVNAKQYHGILRRRQSRAKAESENKA-LKSRKPYLHESRHLHALRRARGCGGRF 227
                                69***************************9.9*************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MYGGSVRILT SADHPWLPTL AHDFHRSSRV EFATTRKDRQ KQQEKKPHCF GALHLQRVLM  60
TSSVHDHSDS SESDDQQKHS ESPMISSAPA PGMSNPGIPG PIQYVAPPQI GAGHAVAPGA  120
YPYPDPYYRS IFAPYDTQPY PPQPYGGQPT VHLQLMGIQQ AGVPLPTDAV EEPVFVNAKQ  180
YHGILRRRQS RAKAESENKA LKSRKPYLHE SRHLHALRRA RGCGGRFLNA KKDENEQSEG  240
DNSQAIINLN SDKKRGKKNG RKRNHRRLHQ SSVTGRRNPA NFCWNPVTGS RIPVTDYQNT  300
LKKSFLIPVR RLHRSSVTGR RNPANFCWNP VTGSRIPVTD Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-49NF-YA family protein