PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001865.1_g000006.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 463aa MW: 50668.9 Da PI: 5.8911

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001865.1_g000006.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEd+ l+++++ G g+W++ ++ g+ R++k+c++rw +yl Rmu_sc0001865.1_g000006.1 14 KGRWTAEEDQTLINYIHANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	51.6	2.2e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++E+++++++++ lG++ W++Ia+ ++ gRt++++k++w+++l Rmu_sc0001865.1_g000006.1 67 RGNITPQEEDIIIKLHASLGNR-WSLIASQLP-GRTDNEIKNYWNSHL 112 7999****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MGRAPCCEKV GLKKGRWTAE EDQTLINYIH ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRTDLKRGNI TPQEEDIIIK LHASLGNRWS LIASQLPGRT DNEIKNYWNS HLSRKIDTFR 120 RPLNMMHMAT AAAASSSSGS STAAAGVQMN MAMKLGPPTS KRRGRGGRTS RWAMKKNKIS 180 YASTGINHHL DCTHKDDGSA TVTSSSSINM CPPPPPSAAA VAAGIGQKET QNLGGGGPSD 240 CSEGKIDGGG EVAFNDLMMD AVNETILDPA GALTLSGERQ SDDGDIMGVI RDEDTGKLLC 300 GPNKVMTTCT AAASHEEEHQ LDQISATNLS SSSHSNSKSS YYGEAEAAAF DGEDWYNSCS 360 NYSAGSAAAT CNFDQQKQQY DGMNGTLDDE MRWNWESDIH MHDYLWNIDQ KDDENILSWL 420 WEHQAAEDHH DDHHNNKSRS EATVDDEHVP ADKHNAILAW LLS

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MGRAPCCEKV GLKKGRWTAE EDQTLINYIH ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRTDLKRGNI TPQEEDIIIK LHASLGNRWS LIASQLPGRT DNEIKNYWNS HLSRKIDTFR  120
RPLNMMHMAT AAAASSSSGS STAAAGVQMN MAMKLGPPTS KRRGRGGRTS RWAMKKNKIS  180
YASTGINHHL DCTHKDDGSA TVTSSSSINM CPPPPPSAAA VAAGIGQKET QNLGGGGPSD  240
CSEGKIDGGG EVAFNDLMMD AVNETILDPA GALTLSGERQ SDDGDIMGVI RDEDTGKLLC  300
GPNKVMTTCT AAASHEEEHQ LDQISATNLS SSSHSNSKSS YYGEAEAAAF DGEDWYNSCS  360
NYSAGSAAAT CNFDQQKQQY DGMNGTLDDE MRWNWESDIH MHDYLWNIDQ KDDENILSWL  420
WEHQAAEDHH DDHHNNKSRS EATVDDEHVP ADKHNAILAW LLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G62610.1	2e-70	MYB family protein