PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001846.1_g000027.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 549aa    MW: 61193.9 Da    PI: 4.6865
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001846.1_g000027.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS447.58.8e-1371805492374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                ++lL++cA a+s+g+ e+a++++++l++l+s +gdp qR+aay++e+L ar+a+s++ ly+al+++e +   ss +laa+++++
  Rmu_sc0001846.1_g000027.1 180 KQLLFDCAGALSEGNIEEASTIINELRQLVSIQGDPPQRIAAYMVEGLVARMASSGKYLYRALKCKEPP---SSYRLAAMQVLF 260
                                589*****************************************************************9...9*********** PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLak 167
                                ev+P++kf++++aN aI ea++ e+ vHiiDfdi+qG Q+++L+qaLa+ p++pp+lR+Tgv++pes+      l+++g+rL++
  Rmu_sc0001846.1_g000027.1 261 EVCPCFKFGFMAANGAIIEATKDEKSVHIIDFDINQGNQYITLIQALAELPGKPPHLRLTGVDDPESVqrPVGGLNTIGQRLEQ 344
                                ******************************************************************99888899********** PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                                +Ae lgv+fef++ va++++ +++ +L++++gEal++n+++qlh+++desvs+ ++rd++L+l kslsPk+v+vveq++++n++
  Rmu_sc0001846.1_g000027.1 345 LAEGLGVSFEFQA-VASKTSIISPPMLHCRQGEALVINFAFQLHHMPDESVSTVNQRDQLLRLAKSLSPKLVTVVEQDVNTNTT 427
                                *************.7********************************************************************* PP

                       GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                                +F+ rf+ea +yysa+fdslea +pres++r++vE+++l+r+ivn+vaceg+er+er e ++kWr+r+ +aGF++ p+s+++++
  Rmu_sc0001846.1_g000027.1 428 PFFPRFVEAYNYYSAVFDSLEAAIPRESQDRMNVEKQCLARDIVNIVACEGEERIERYEVAGKWRARMAMAGFTSTPMSKSVTD 511
                                ************************************************************************************ PP

                       GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                +++ l+r++ ++ y+++ee g l +gW+d++L+++SaWr
  Rmu_sc0001846.1_g000027.1 512 SIRDLIRMYCDR-YKIKEEMGGLHFGWEDKSLIVASAWR 549
                                **********66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    
MSKLPHFIHA ELSYSTESYE FLDSPSEEVV HPSSSSISGS SFNEQAASFY PRRAGSVSSL  60
TTQNPSSASF MSMRLHDAYQ TNIDSDYLES QSPEAVSFDD GKMRLKLQEL ERALLEDNDA  120
EDDEEMIGNG QSMEIDGEWT EPIQKALLHD SPKESSSSDS YLSSTSTNKE ISRVSPRTPK  180
QLLFDCAGAL SEGNIEEAST IINELRQLVS IQGDPPQRIA AYMVEGLVAR MASSGKYLYR  240
ALKCKEPPSS YRLAAMQVLF EVCPCFKFGF MAANGAIIEA TKDEKSVHII DFDINQGNQY  300
ITLIQALAEL PGKPPHLRLT GVDDPESVQR PVGGLNTIGQ RLEQLAEGLG VSFEFQAVAS  360
KTSIISPPML HCRQGEALVI NFAFQLHHMP DESVSTVNQR DQLLRLAKSL SPKLVTVVEQ  420
DVNTNTTPFF PRFVEAYNYY SAVFDSLEAA IPRESQDRMN VEKQCLARDI VNIVACEGEE  480
RIERYEVAGK WRARMAMAGF TSTPMSKSVT DSIRDLIRMY CDRYKIKEEM GGLHFGWEDK  540
SLIVASAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0GRAS family protein