PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001839.1_g000023.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 463aa MW: 50887.9 Da PI: 6.3349

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001839.1_g000023.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.1	7.7e-09	220	266	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+ +++N++f +Lr ++P+ + K++Ka+ L A+ YI++Lq Rmu_sc0001839.1_g000023.1 220 NHVEAERQSCEKLNQRFYTLRAVVPNiS------KMDKASLLCDAITYINDLQ 266 799*********************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MGEKLWVNEE EKVIVESVLG TEARQVLISL ASENLLSDLA RRPGQLGVQQ GLSQLVQGSS 60 WDYAVFWQVV GLKSGGAALI WGDGHCRDTK GGGVGDESSS RDSNLEGVQK KNVEVSGCLG 120 SSTRVSVVRV RITMRGETDS SFPSESFDLQ AIGTSNGCRT EDNEVKLFPH LSQIMSGNFS 180 STAGVSSSER PKDKSLAQID ERKPRKRGRK PANGREEPLN HVEAERQSCE KLNQRFYTLR 240 AVVPNISKMD KASLLCDAIT YINDLQMKIR VMETEKQMGN SSQMQFPVPV IDFQEWHEDA 300 VEHNIVAQDT NVSVTDDDTV IHTFSIPTQA GSGDHAFNTF FFDLKPTVNR RPPSITDLVP 360 TTFNHRSEAP IQLQCRNLTK PRPVGDGLQV RDWRRGPGED EGGDGTGRRW AASEVLEMGC 420 VGAGIGRRWA AGERLEKTKV SARNRAGGAW VSTGEAWVAG EKF

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MGEKLWVNEE EKVIVESVLG TEARQVLISL ASENLLSDLA RRPGQLGVQQ GLSQLVQGSS  60
WDYAVFWQVV GLKSGGAALI WGDGHCRDTK GGGVGDESSS RDSNLEGVQK KNVEVSGCLG  120
SSTRVSVVRV RITMRGETDS SFPSESFDLQ AIGTSNGCRT EDNEVKLFPH LSQIMSGNFS  180
STAGVSSSER PKDKSLAQID ERKPRKRGRK PANGREEPLN HVEAERQSCE KLNQRFYTLR  240
AVVPNISKMD KASLLCDAIT YINDLQMKIR VMETEKQMGN SSQMQFPVPV IDFQEWHEDA  300
VEHNIVAQDT NVSVTDDDTV IHTFSIPTQA GSGDHAFNTF FFDLKPTVNR RPPSITDLVP  360
TTFNHRSEAP IQLQCRNLTK PRPVGDGLQV RDWRRGPGED EGGDGTGRRW AASEVLEMGC  420
VGAGIGRRWA AGERLEKTKV SARNRAGGAW VSTGEAWVAG EKF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	210	RKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	1e-46	bHLH family protein