PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001836.1_g000051.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 734aa MW: 84793.7 Da PI: 9.6521

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001836.1_g000051.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.5	4.4e-13	14	94	4	91
FAR1 4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++YAk+ G +rk+++ k+ +g i+ ++vCs+ + ++ k++ ++ +++ tgC a+++ +++dg++++t++ leHnH+l Rmu_sc0001836.1_g000051.1 14 EDYAKKSGWAIRKRSNPKK--EGAIKYVQLVCSRALRGKSPKES-----EPISSQITGCFARIRAVLKSDGEYNLTTVCLEHNHPL 92 68**********99887..999******9888887766.....899999***************************** PP FAR1 90 ap 91 +p Rmu_sc0001836.1_g000051.1 93 CP 94 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence
MRFNSYDGLY DYCEDYAKKS GWAIRKRSNP KKEGAIKYVQ LVCSRALRGK SPKESEPISS 60 QITGCFARIR AVLKSDGEYN LTTVCLEHNH PLCPTTARRI RQYRELDQHS KDRFCFNEDA 120 GVRQSKSYHA ILTEKGGYAN LGYSKRDAQN FIDKRRRLKL QSGDADALHR YFIMMQKNNP 180 NFFYSMDLDE EGRLRNLFWA DARSRAACED FGDVITFDMT CLTNKYDMPF ASFVGVNHHG 240 QSLLLGCGLL CDETTMSFTW LFEVWKTCMK GKSPNAIITD QCAAMKNAIE VVFPDAKHRL 300 CLWHIMEKIP KKLRGYKKEY EEIKTIMTDA VYETSTTSLK IFVEQYGAAM ADKIEKEEQE 360 EFNTLYRGVE PFSGFKFEKQ FRDAYTNAKF KEFQDELRAN VYCNSWPAKE EGALCTHTVM 420 ESRYKKKKKG RKQKVLLKAS LKKKLKYKGP ICHHVEFDKD SNDIKCTCRL FEFRGILCRH 480 IISVLIQRGL ATVSSKYVLT RWKKNLKRRY SFIKGCYDDS KFKEVRTLQN KMLEAFHDLI 540 NFVEGEELTD IVLQGIKELK AKVLQSKPVS KVNPSTGTPS LEEPIPTKKI LDPKIVKRVG 600 RPTFKRKISR AEEAIQKAKK RWHKRKVTQS TMPNKRSRKI VEDENAYDTG VNNSTPPHDY 660 DPPKTPSNIN STAFIVESTP LSNCGHPITP PNVNVIEVEI EMLLLLQIFR LCRSYGTDLP 720 QQSIDLSLLC FQQP

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence

MRFNSYDGLY DYCEDYAKKS GWAIRKRSNP KKEGAIKYVQ LVCSRALRGK SPKESEPISS  60
QITGCFARIR AVLKSDGEYN LTTVCLEHNH PLCPTTARRI RQYRELDQHS KDRFCFNEDA  120
GVRQSKSYHA ILTEKGGYAN LGYSKRDAQN FIDKRRRLKL QSGDADALHR YFIMMQKNNP  180
NFFYSMDLDE EGRLRNLFWA DARSRAACED FGDVITFDMT CLTNKYDMPF ASFVGVNHHG  240
QSLLLGCGLL CDETTMSFTW LFEVWKTCMK GKSPNAIITD QCAAMKNAIE VVFPDAKHRL  300
CLWHIMEKIP KKLRGYKKEY EEIKTIMTDA VYETSTTSLK IFVEQYGAAM ADKIEKEEQE  360
EFNTLYRGVE PFSGFKFEKQ FRDAYTNAKF KEFQDELRAN VYCNSWPAKE EGALCTHTVM  420
ESRYKKKKKG RKQKVLLKAS LKKKLKYKGP ICHHVEFDKD SNDIKCTCRL FEFRGILCRH  480
IISVLIQRGL ATVSSKYVLT RWKKNLKRRY SFIKGCYDDS KFKEVRTLQN KMLEAFHDLI  540
NFVEGEELTD IVLQGIKELK AKVLQSKPVS KVNPSTGTPS LEEPIPTKKI LDPKIVKRVG  600
RPTFKRKISR AEEAIQKAKK RWHKRKVTQS TMPNKRSRKI VEDENAYDTG VNNSTPPHDY  660
DPPKTPSNIN STAFIVESTP LSNCGHPITP PNVNVIEVEI EMLLLLQIFR LCRSYGTDLP  720
QQSIDLSLLC FQQP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	158	KRRRL
2	425	448	KKKKKGRKQKVLLKASLKKKLKYK
3	426	449	KKKKKGRKQKVLLKASLKKKLKYK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	5e-71	FAR1 family protein