PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0001836.1_g000048.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | Trihelix | ||||||||
Protein Properties | Length: 208aa MW: 22680 Da PI: 7.5492 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 27.7 | 7e-09 | 122 | 185 | 1 | 60 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkr 60 +Wt +e +Li + ++ +++l r++lk++ W++v+ + +++ qC +k+++l+++ Rmu_sc0001836.1_g000048.1 122 CWTYNEAETLISIFKDQWSSLDRTNLKATNWDDVATTLaaqfPLVSPLKTAMQCHNKINKLRRE 185 7*************************************54332223357899********9875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence |
MESGHQLARL LTLVTSVVVF CSNLAGRARL GAVKVTVANR DFSRFQAIPA VSGHQTGVEG 60 GAAKIWWPLV VVAGGARGPR AATVDGVCSL SSPTTTITTL IPPLTYALAS LLIPHPNAPP 120 PCWTYNEAET LISIFKDQWS SLDRTNLKAT NWDDVATTLA AQFPLVSPLK TAMQCHNKIN 180 KLRREVEMGL KVEQEHPWDE IGEEDYRH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 4e-16 | Trihelix family protein |