PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001833.1_g000013.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 317aa    MW: 36834.9 Da    PI: 8.5307
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001833.1_g000013.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.82.4e-20698190
                       FAR1  1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtklel 83
                               +fYn+YAk +GF+vr ++++ s +  g++t+ ++vCs +gkr+ee  + +++ r++++etr +C + +kv+ ++  + + v+++ +
  Rmu_sc0001833.1_g000013.1  6 SFYNAYAKAMGFDVRSDYKRLSiRIIGRVTSLRLVCSAQGKRREEYMSnKKRVRKPKKETRFSCPCLFKVRYRSnINAYIVDDFIT 91
                               5******************9998999*****************9988845667889*****************9899********* PP

                       FAR1 84 eHnHela 90
                               +H+H+la
  Rmu_sc0001833.1_g000013.1 92 NHSHQLA 98
                               *****97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MEEAESFYNA YAKAMGFDVR SDYKRLSIRI IGRVTSLRLV CSAQGKRREE YMSNKKRVRK  60
PKKETRFSCP CLFKVRYRSN INAYIVDDFI TNHSHQLAQA HESHLLRSHR SVEDHHLALA  120
TSMQRVSVKP CHTYEYIVDR SGGFKNVGFI MKDLYNKLDS RRREILLEGD AEAALAYMRG  180
KVATDSHFYC KFSIDEDNRL ANMFWRDSNS LVDYTCFGDV LVFDSTYKTN PYEKPLVLFV  240
GSNNHLSTTV FGFALLMDET IETYTWVLET FISSMNNKRH VAILTDGDEA MRRAIEVVLP  300
GCSHRLCTWH FTIDYNN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-55FAR1 family protein