PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001809.1_g000050.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CPP

Protein Properties

Length: 612aa MW: 66707 Da PI: 8.4876

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001809.1_g000050.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	44.7	2.6e-14	156	194	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k CnCk+s+Clk+YCeCfaag +C+ C+C +C+N+ + Rmu_sc0001809.1_g000050.1 156 KQKLCNCKNSRCLKLYCECFAAGIYCKG-CNCINCHNNVD 194 7899**********************.******986 PP
2	TCR	50.3	4.9e-16	237	275	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 k++kgC C+ks ClkkYCeCf+a++ Cse+CkC dCkN Rmu_sc0001809.1_g000050.1 237 KHHKGCACRKSGCLKKYCECFQANVLCSENCKCMDCKNF 275 589***********************************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence
MEQSETVSST APKKLARQLD FTAPVQPSVN SALPERSGPA AVQVQSQPQP HLRAHPQTQP 60 WSQPQPQLQS QSQSQSQPQQ LHNSPAQLAL QSQQQGTVAQ SPKPYLTQAV LHFQARPVGP 120 TMPVNGRIAH LPPKLGKHES PKPRARSEAK ESTPKKQKLC NCKNSRCLKL YCECFAAGIY 180 CKGCNCINCH NNVDNEAARQ DAVGAILERN PKAFRPKIAS SPHESRDSWE DAGEVQKHHK 240 GCACRKSGCL KKYCECFQAN VLCSENCKCM DCKNFDGSEE RRAIFHEDHN TIANMQQANA 300 AISGAIGSSG FGPLVSRQRP SDELFSGIAR DQSVHRITQA QQENHLRPPM ASSSLLSVPT 360 FGIPNAAVSG SSKPTYRSML ANIIQPENIK DLCSRLVVVS GEAAKALAEN RQKEMIDKTT 420 TISATREGKE SKREQVQNPA HGDRLGMNQA DRDGSSGSGS DGGDVQNSRP MSPGTLALMC 480 DEQDKMFMAA ELPNGITTNS QSTTQNPSQE IGCTEVYEEQ ERVILTGFRD FLNLLITRGS 540 IKETMCSPIA KREREIQKDS VEGGTPKKPR CEKATYSNDI GKSPASTNGK VLQSVVTYVS 600 EVGLPLKNNT GQ

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence

MEQSETVSST APKKLARQLD FTAPVQPSVN SALPERSGPA AVQVQSQPQP HLRAHPQTQP  60
WSQPQPQLQS QSQSQSQPQQ LHNSPAQLAL QSQQQGTVAQ SPKPYLTQAV LHFQARPVGP  120
TMPVNGRIAH LPPKLGKHES PKPRARSEAK ESTPKKQKLC NCKNSRCLKL YCECFAAGIY  180
CKGCNCINCH NNVDNEAARQ DAVGAILERN PKAFRPKIAS SPHESRDSWE DAGEVQKHHK  240
GCACRKSGCL KKYCECFQAN VLCSENCKCM DCKNFDGSEE RRAIFHEDHN TIANMQQANA  300
AISGAIGSSG FGPLVSRQRP SDELFSGIAR DQSVHRITQA QQENHLRPPM ASSSLLSVPT  360
FGIPNAAVSG SSKPTYRSML ANIIQPENIK DLCSRLVVVS GEAAKALAEN RQKEMIDKTT  420
TISATREGKE SKREQVQNPA HGDRLGMNQA DRDGSSGSGS DGGDVQNSRP MSPGTLALMC  480
DEQDKMFMAA ELPNGITTNS QSTTQNPSQE IGCTEVYEEQ ERVILTGFRD FLNLLITRGS  540
IKETMCSPIA KREREIQKDS VEGGTPKKPR CEKATYSNDI GKSPASTNGK VLQSVVTYVS  600
EVGLPLKNNT GQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-119	CPP family protein