PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001809.1_g000041.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 1052aa    MW: 115749 Da    PI: 4.9951
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001809.1_g000041.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.5e-183783148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g WT+eEde+l +av+ + g++Wk+Ia+++   Rt+ qc +rwqk+l
  Rmu_sc0001809.1_g000041.1 37 KGQWTPEEDEILRRAVQSFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83
                               799****************************9.************986 PP
2Myb_DNA-binding673.4e-2189135148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                +g+W++eEde++v++vk++G++ W+tIa++++ gR +kqc++rw+++l
  Rmu_sc0001809.1_g000041.1  89 KGPWSKEEDEIIVELVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135
                                79******************************.*************97 PP
3Myb_DNA-binding46.58.5e-15141183145
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                + +WT++E++ l++a++ +G++ W+   + ++ gRt++ +k++w+
  Rmu_sc0001809.1_g000041.1 141 KEAWTQDEELALIRAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 183
                                579*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1052 aa     Download sequence    
MDGDRTNSTA EGSGGDSIQR ARALHGRSSG PTRRSTKGQW TPEEDEILRR AVQSFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII VELVKKYGPK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPGIN KEAWTQDEEL ALIRAHQIYG NKWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DSYLKSGLLP DLEGTPHVGH QNQPIISSCS RVQNSGDDSA PRGAEGEEIS  240
ECSQDSNVAG CFQSRTEMVN VVLHTRDRSH IREVSRLGND PSSSPASCSE PYYPSMGDAT  300
FSIPEIPPEI VSSSKFIEHS FSHDAGESMS GDFQFNMQEL TNISSLESEQ GASGMHTHCM  360
SSNEIHDVVN FPFQTAGAFP ASTSMGNMAD GSVKSERMLI SDDECCRALF SEAINQGYFS  420
RDFTNGLNMV DLIACTDSLL LQSSSNLQMS ETGRSSQLYC PLNSDVVGTS CSQPVSAHNG  480
PLIFAGEANN LFRVQEQEYV TNSEDGFVYT NDTARSPSNV VGNETRMQEQ SDLVEDPSNL  540
VPVNTFDSGL DTQTSPSLDV RSDVHTEQQD DGALCYEPPR FPSLDIPFLS CDLVQSGNDM  600
QQEYSPLGIR QLMMSSMNCL TPFRLWDSPS RDGSPDAVLK SAAKTFTGTP SILKKRHRDL  660
LSPLSPLSDR RIDKKLGTDV TSSLARDFSR LEVMFEDSET QEAPLHYPSS NQQRTSDAHE  720
EDKENMDTCE TRIEEGTDTV AISADEIAQK HFDDSESQEK MKQGNADVDA KTKADAVPSS  780
HDAQQSSGVL AEHNTNDLLL YSPDQAGCKA EKALSLSAGT PKVQHSKSFS AKQCSSVITP  840
TITVKKRESY LVTQTCIQSD LLSAPLETTS DNAGNGASTE TIFGVTPLKR SIDSPSAWKS  900
PSAWKSPSAW KSPWFINSFL PGPRVDTEIT IEDIGFFMSP GDRSYDAIGL MKQISEHTAS  960
AYANAQEVLG NETPESLLKE RRKDHGIVDS DKNLAPPNQL GSSSLSAPNV VVERRTLDFS  1020
ECETPGKGKE SGKFLNAKSF SSPSSYLLKG CR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0MYB family protein