PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001800.1_g000017.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 225aa    MW: 25260.7 Da    PI: 6.5333
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001800.1_g000017.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.6e-0971118454
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                a+  rE+ RR+r+N++f  L  +l +    +  K +K +iL  A++ + +L
  Rmu_sc0001800.1_g000017.1  71 AKACREKLRRERLNDKFVDLSAVLEPG---RPAKTDKPAILDDAIRVLTQL 118
                                6778**********************8...89**************99998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MDGMEGIEDF FGYPSLIEEP QFPNFLWSNP SPSFPEIEFS ANSGVAAPSQ TQEKQCPRKR  60
GRTESWSGSG AKACREKLRR ERLNDKFVDL SAVLEPGRPA KTDKPAILDD AIRVLTQLRA  120
EAQELTQTNE KLLEEIKSLK AEKNELREEK VVLKADKEKL EQQLKAMTIP PSGFMPAHPA  180
VPATYHPGAS KMAVYPSYGM IPMWHYLPPS TRDTSRDHEL RPPAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15763PRKRGRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14410.28e-85bHLH family protein