PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0001788.1_g000009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | C3H | ||||||||
Protein Properties | Length: 464aa MW: 49748 Da PI: 8.7599 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.9 | 2.6e-11 | 46 | 72 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++rtG+C yG rC+++H++ Rmu_sc0001788.1_g000009.1 46 PGVPNCVYYMRTGFCGYGVRCRYSHPR 72 5789*********************96 PP | |||||||
2 | zf-CCCH | 40.1 | 6e-13 | 93 | 117 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++++tGtCk+G++CkF+H++ Rmu_sc0001788.1_g000009.1 93 EPVCQYYLKTGTCKFGASCKFHHPK 117 789********************96 PP | |||||||
3 | zf-CCCH | 37 | 5.8e-12 | 138 | 163 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+++++tG+Ck+G +CkF+H++ Rmu_sc0001788.1_g000009.1 138 GENECSYYLKTGQCKFGLTCKFHHPQ 163 6789********************97 PP | |||||||
4 | zf-CCCH | 35.8 | 1.3e-11 | 294 | 320 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H++ Rmu_sc0001788.1_g000009.1 294 PGEPECQYYLRTGDCKFGPSCRYHHPR 320 5799*********************96 PP | |||||||
5 | zf-CCCH | 38.3 | 2.2e-12 | 340 | 366 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ e+C f++++G+Ck+G++CkF H++ Rmu_sc0001788.1_g000009.1 340 PGVEPCTFYLQNGHCKFGSSCKFDHPM 366 578**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence |
MEQLYGRSPA RNGSNPEWSS TAGETGLEEQ MWQFGLTSTE SYPERPGVPN CVYYMRTGFC 60 GYGVRCRYSH PRDRAAVVAA VRATGDYPER VGEPVCQYYL KTGTCKFGAS CKFHHPKHGG 120 GSLTRAPLNI YGYPLRPGEN ECSYYLKTGQ CKFGLTCKFH HPQPAGTTVP ASAPQFYPSV 180 QSPSVPMPEQ FGGQSTGLRV ARPQLLPGSY VQGAYGPVLI PPGVVPIPSW NPYSAPLSPV 240 LSPGAQPTVG ATSLYGLTQL SSPTHALARP YPSVPSSVGP SSSSPNEQAF PERPGEPECQ 300 YYLRTGDCKF GPSCRYHHPR DRIAPRTNCL LSTVGLPLRP GVEPCTFYLQ NGHCKFGSSC 360 KFDHPMGTMR YSPSASSLDM PVAPFPVGSL LGTLAPSSSS SELRPELISA RMPSSGNPSS 420 SSVGLIFSQS GSVSLADVQL SSQTSVPISN SRSTRQGGEV RRSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 0.0 | C3H family protein |