PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001782.1_g000042.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARR-B
Protein Properties Length: 703aa    MW: 78743.3 Da    PI: 4.8948
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001782.1_g000042.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like71.61.2e-22213266155
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                k r++W++eLH++F+++   L G+ekA+Pk+ilelm+v++L++ +v+SHLQk+R 
  Rmu_sc0001782.1_g000042.1 213 KRRIVWSEELHKKFLDVFYYL-GPEKAVPKKILELMNVEDLSRGNVASHLQKFRE 266
                                689******************.********************************5 PP
2Myb_DNA-binding26.12e-08217265348
                                SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                                 W++e++++++d++  lG++   +k+I + m+ + +++ ++ s++qk++
  Rmu_sc0001782.1_g000042.1 217 VWSEELHKKFLDVFYYLGPEkaVPKKILELMNvEDLSRGNVASHLQKFR 265
                                6*****************99***************************97 PP
3Response_reg77.16.5e-26281331106
                                EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHH.HHHTTTSEEEEEESTT CS
               Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkei.reeepklpiivvtahg 81 
                                vl vdD+ + ++ l+  l+k +y ev++a ++ eal++l+e++  +Dl++ D++mp+mdG++llk + +e  ++lp+i+v+++g
  Rmu_sc0001782.1_g000042.1  28 VLAVDDDLTYLKFLEATLRKCNY-EVTTANHAYEALQILRENRnkFDLVISDVQMPDMDGFQLLKLLgHE--MDLPVIMVSGNG 108
                                799********************.***************999889**********************555..47********** PP

                                THHHHHHHHHTTESEEEESS--HHH CS
               Response_reg  82 eeedalealkaGakdflsKpfdpee 106
                                + e++++ ++ Ga  +l+Kp+++e 
  Rmu_sc0001782.1_g000042.1 109 DTELMKKGISHGACCYLVKPVNIEV 133
                                *********************9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    
MMDAKDQLGG SVGDQNGDMD RFPDGMRVLA VDDDLTYLKF LEATLRKCNY EVTTANHAYE  60
ALQILRENRN KFDLVISDVQ MPDMDGFQLL KLLGHEMDLP VIMVSGNGDT ELMKKGISHG  120
ACCYLVKPVN IEVFKTIWQH VFLRKKLNSK DQCKSCDQDK VCKGTGEGEE GMSAASSSDK  180
NGKHKRKRKH QNEDDEEGED DEDENEEPST QKKRRIVWSE ELHKKFLDVF YYLGPEKAVP  240
KKILELMNVE DLSRGNVASH LQKFREQLKK GGSKKEKQRA SMVVDLGRKD SSYMLHTGPI  300
DESGGRLSNP APLSSYIPPQ MLSRSNSPTD FNMPRINPSS HLLRPGQSQN LCNSINNVAN  360
LQPSVLTNQS RNLFQVSQVP VEQNQLQQKN STIDIRQSTP NNNGSTGTFP YKGLSGSSVG  420
YDCNTSMLQG NPQQKHGTLE FGNQSSLRVN SLNPKSFDNA LCRSSNFLDN DGYGESWQGG  480
MQDCGQLYQF PSTALLRSEA SNFGQFPANN LGVSSSTPQI GNTPNDFSSV SALSASVEEP  540
RENIHIKNQG HVVPTMYCTP NQWWEDHKQD YNHNWNLSSI VSSNGVVDPL SRTLDQNDAV  600
CSRSINSSLF DQFHGGNRTI VQRLEVENST MHTKIDPNED YILLEQAESN DGLVQNSLES  660
LDNQVELENE FDLLDGEFGF DAIQEQKKND EYDLLDGGFR FEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-82ARR-B family protein