PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001758.1_g000023.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 529aa MW: 59302.1 Da PI: 7.4754

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001758.1_g000023.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.8e-12	369	414	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+r+N++f Lr +P+ +++Ka+ L AveYI++L Rmu_sc0001758.1_g000023.1 369 NHVEAERQRRERLNHRFYALRAAVPNV-----SRMDKASLLADAVEYINNL 414 699*********************6.....4*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MGEIISSCSS PYNVYPETTS ATLLQQRLQF ILQNRPETWV YSIFWKASKD SNDDNGVSLS 60 WAGGHFRGIR DFSSKKSSIQ NSDNNYRPRF GMVNREIEAL CHDDMDSERF EDINGDVTDS 120 EWFYFYTVSL TQSFAAGHNG YSNILGRVHS SSASIWLAGD AEFQFYECER VKEARMHGIR 180 TLVCVATYSG VLEVASLDVI KEDWGFVQQA KSLFGISDSN SKQGSQEAHV HVPLPENGLM 240 FSATQKQSNT HGKQSYACFQ SENASLDVIK EDWGFVQQAK SLFGISDSNS KQGSQEAHVH 300 VPLPENGLMF SATQKQSNTH GRGKREVAFN IGGSSSDSGP SENIENNRSK KRGRSSSHVN 360 GRRESPPLNH VEAERQRRER LNHRFYALRA AVPNVSRMDK ASLLADAVEY INNLKTKIDK 420 LEAKIQAQTK IPKVGSTNSK SYRASAVMEV DVKFVGSEAM IRVRSTDSED YPYARLMNAL 480 KDLELHIYHA SISSVKEFML QDVVARVPFG FTSEEAMRTA IIKRLSNFP

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MGEIISSCSS PYNVYPETTS ATLLQQRLQF ILQNRPETWV YSIFWKASKD SNDDNGVSLS  60
WAGGHFRGIR DFSSKKSSIQ NSDNNYRPRF GMVNREIEAL CHDDMDSERF EDINGDVTDS  120
EWFYFYTVSL TQSFAAGHNG YSNILGRVHS SSASIWLAGD AEFQFYECER VKEARMHGIR  180
TLVCVATYSG VLEVASLDVI KEDWGFVQQA KSLFGISDSN SKQGSQEAHV HVPLPENGLM  240
FSATQKQSNT HGKQSYACFQ SENASLDVIK EDWGFVQQAK SLFGISDSNS KQGSQEAHVH  300
VPLPENGLMF SATQKQSNTH GRGKREVAFN IGGSSSDSGP SENIENNRSK KRGRSSSHVN  360
GRRESPPLNH VEAERQRRER LNHRFYALRA AVPNVSRMDK ASLLADAVEY INNLKTKIDK  420
LEAKIQAQTK IPKVGSTNSK SYRASAVMEV DVKFVGSEAM IRVRSTDSED YPYARLMNAL  480
KDLELHIYHA SISSVKEFML QDVVARVPFG FTSEEAMRTA IIKRLSNFP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	375	380	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17880.1	6e-76	bHLH family protein