PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001753.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 428aa MW: 46508.2 Da PI: 6.6275

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001753.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.6	1.6e-09	12	56	4	46
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT e d+ + +a + ++ + +W++Ia+ + g+ l+++k+++ Rmu_sc0001753.1_g000003.1 12 WTWEQDKAFENALATYPEDapdRWDKIAADVE-GKNLEEIKHHYEL 56 ******************************.*********75 PP
2	Myb_DNA-binding	42.7	1.3e-13	118	162	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++ + +++G+g+W++I+r + +Rt+ q+ s+ qky Rmu_sc0001753.1_g000003.1 118 AWTEDEHRQFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 162 6*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MTVDEAVASA LWTWEQDKAF ENALATYPED APDRWDKIAA DVEGKNLEEI KHHYELLLDD 60 ISQIEAGCIP LPCYNSSSEG STSHASDEGT SKKGHYSSES NHGSKASRAD QERRKGIAWT 120 EDEHRQFLLG LEKYGKGDWR SISRNFVVTR TPTQVASHAQ KYFIRLNSMN KDRRRSSIHD 180 ITSVNNGEIA AIQGPITGQG NGSAVGPSGS AKSTKQSAAG PPGVGMYGAP SIGQPIGGPL 240 VSAVGTPVNL AGHSPHMAYG VRAPMPPGAL VPGAPMNMPP MTYPMPHTAH SSSVWSVSEI 300 VEAVNGRILK WGPVLLEPFL QTPEPSNPNQ CFFAISGQNL DAHDCNYPEI KAARTGTLKP 360 RLILWSDSLA VWERPYMIAL VYESHGIGMT ELGSLIGIPN TYCREGLRFW SGRQGRDTGA 420 CEDRRFTL

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MTVDEAVASA LWTWEQDKAF ENALATYPED APDRWDKIAA DVEGKNLEEI KHHYELLLDD  60
ISQIEAGCIP LPCYNSSSEG STSHASDEGT SKKGHYSSES NHGSKASRAD QERRKGIAWT  120
EDEHRQFLLG LEKYGKGDWR SISRNFVVTR TPTQVASHAQ KYFIRLNSMN KDRRRSSIHD  180
ITSVNNGEIA AIQGPITGQG NGSAVGPSGS AKSTKQSAAG PPGVGMYGAP SIGQPIGGPL  240
VSAVGTPVNL AGHSPHMAYG VRAPMPPGAL VPGAPMNMPP MTYPMPHTAH SSSVWSVSEI  300
VEAVNGRILK WGPVLLEPFL QTPEPSNPNQ CFFAISGQNL DAHDCNYPEI KAARTGTLKP  360
RLILWSDSLA VWERPYMIAL VYESHGIGMT ELGSLIGIPN TYCREGLRFW SGRQGRDTGA  420
CEDRRFTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-111	MYB family protein