PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001665.1_g000048.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 587aa MW: 67615.6 Da PI: 8.7621

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001665.1_g000048.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.7	5.9e-21	56	148	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 +fYn+YAk +GF+vr+++++ s +++g++t+ ++vCs +gkr+ee + +++ rr+++etr +C + +kv+ ++ + + v+++ Rmu_sc0001665.1_g000048.1 56 SFYNAYAKAMGFDVRNDYKRLSiRTTGRVTSLRLVCSAQGKRREEYMSnKKRVRRPKKETRFSCPCLFKVRYRSnINAYIVDDF 139 5****************999999**************9988845677889*************9899*** PP FAR1 82 eleHnHela 90 ++H+H+la Rmu_sc0001665.1_g000048.1 140 ITNHSHQLA 148 *****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence
MDGSYEPSIS DIGLVSQSSI NGSDCNEMQY KGVRYDKLST EDLKGQMFKT VEEAESFYNA 60 YAKAMGFDVR NDYKRLSIRT TGRVTSLRLV CSAQGKRREE YMSNKKRVRR PKKETRFSCP 120 CLFKVRYRSN INAYIVDDFI TNHSHQLAQA HESHLLRSHR SVEDHHLALA TSMQRVSVKP 180 CHTYEYIVDR SGGFKNVGRP PQFEKRVDTY LQLYKGDKVD SFTVEFTDQE GGDVLDRWIR 240 FAITKGVEEL HLRHHVFDYV FPHWLLSEQV NAGSRVNLKV LSICSIDGIL RPPPDFSGFN 300 QLKTLHLIHA IIDPSFTSNL FSVFVSLESL TLYRCRLGRY LANTRTDLNI VAGDRLTELI 360 VMDCGPAKIK ISAQNLASLE YINNHWTSLS IKTPRLARIY LPDTVHDPLL PHVLTQFATC 420 SELDSLFLRM YPETLINFSM PAFGNLRKLK VDICIEYGRP YNDDNLLRFL DFLKAAPVLE 480 ELVTALIDLK FTDTTDEREI RNVSGFTHDN LKLVKIKSFH GHWSEIEFAI CILKYTTNLK 540 IMEIGPFARS VSGDYFREKV NYPERPRAIM KKKIKEVKTD AQIIFLP

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence

MDGSYEPSIS DIGLVSQSSI NGSDCNEMQY KGVRYDKLST EDLKGQMFKT VEEAESFYNA  60
YAKAMGFDVR NDYKRLSIRT TGRVTSLRLV CSAQGKRREE YMSNKKRVRR PKKETRFSCP  120
CLFKVRYRSN INAYIVDDFI TNHSHQLAQA HESHLLRSHR SVEDHHLALA TSMQRVSVKP  180
CHTYEYIVDR SGGFKNVGRP PQFEKRVDTY LQLYKGDKVD SFTVEFTDQE GGDVLDRWIR  240
FAITKGVEEL HLRHHVFDYV FPHWLLSEQV NAGSRVNLKV LSICSIDGIL RPPPDFSGFN  300
QLKTLHLIHA IIDPSFTSNL FSVFVSLESL TLYRCRLGRY LANTRTDLNI VAGDRLTELI  360
VMDCGPAKIK ISAQNLASLE YINNHWTSLS IKTPRLARIY LPDTVHDPLL PHVLTQFATC  420
SELDSLFLRM YPETLINFSM PAFGNLRKLK VDICIEYGRP YNDDNLLRFL DFLKAAPVLE  480
ELVTALIDLK FTDTTDEREI RNVSGFTHDN LKLVKIKSFH GHWSEIEFAI CILKYTTNLK  540
IMEIGPFARS VSGDYFREKV NYPERPRAIM KKKIKEVKTD AQIIFLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-15	FAR1 family protein