PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0001576.1_g000029.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 26455 Da PI: 7.2524 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.2e-18 | 56 | 105 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ + +r++lg+f tae Aa a+++a++k++g Rmu_sc0001576.1_g000029.1 56 HYRGVRQRP-WGKFAAEIRDPK----KaARVWLGTFETAEAAALAYDEAALKFKG 105 7********.**********94....45************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence |
MSAMVSALSQ VISGNSSTDT NQNPALQLPQ QSGAAVLEHD QYHQQAPDQG SVRRRHYRGV 60 RQRPWGKFAA EIRDPKKAAR VWLGTFETAE AAALAYDEAA LKFKGSKAKL NFPERVQGTS 120 ELGGYLTTNT VAHQPLISDY HHQQLVYPNN IPNTGQYYPQ FYGNLNYGQT DQRIYYQPTT 180 SSSPPFIPIS QAQEEDQQQQ QALSFPMPAF GSSSSNLDPE YPQNNTTRNF DNSHSRG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 2e-28 | ERF family protein |