PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001576.1_g000027.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 390aa    MW: 43703.4 Da    PI: 9.9598
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001576.1_g000027.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.8e-19179228255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+GVr+++ +g+W+AeIrdp     + +r++lg+f +ae Aa a+++a+++++g
  Rmu_sc0001576.1_g000027.1 179 HYRGVRRRP-WGKWAAEIRDPQ----KaARVWLGTFESAEAAALAYDEAALRFKG 228
                                69*******.**********93....36***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    
MAAPPCPRAR HHHPCRLRQT VPMAHHESQR LNLRQNRHGQ RSSGGHDLLL ARLGQFEFGS  60
AWTIRTAFQY PADRFRRGSD GIVDRKHGKR PLPSNESEKK EEEVEYHRNI FPVYSSRSQQ  120
DNSAMVSALS QVIANAHEQN PLQLDHQVHG IPLIISADNH VEQSKPAVVF QAQGNMRQHY  180
RGVRRRPWGK WAAEIRDPQK AARVWLGTFE SAEAAALAYD EAALRFKGSK AKLNFPERVQ  240
GISPSTSSGR YLAISSIDHD QRVDNSAPPA APISQLTTYS IPNDINFDYD AQHLGSSTTS  300
NRNVDFGVSS SQNYGQERIM PEINVPTTSS STSSGSSMPS HHQEVRLQQQ EDQQQLLRLP  360
MMPFGGSSSS SSDPPAKYRR DSSGRGDYRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.18e-39ERF family protein