PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0001527.1_g000016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 23060.4 Da PI: 10.8832 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.3e-18 | 75 | 123 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +gr++AeIrd + + r +lg+f+taeeAa+a++aa++ ++g Rmu_sc0001527.1_g000016.1 75 FRGVRKRP-WGRYAAEIRDpW-----TkSRKWLGTFDTAEEAARAYDAAARGFRG 123 8*******.**********88.....44**********************87765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence |
MALDAMHTSL PSLAADPPPP PPAKASRGAM RSAHVRGAMK KKAGQDGGEM KKEKEEAAKD 60 GGGGRRSRSS KEGSFRGVRK RPWGRYAAEI RDPWTKSRKW LGTFDTAEEA ARAYDAAARG 120 FRGVRAKTNF ENPAPPKKHA LVIGGKEVLW TPPVRKNDSV PAPAAPVRSE YKGYKLENLG 180 PVVSEQEKKM KLAAESGKKP FQFDLNLPAP SF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 65 | 82 | RRSRSSKEGSFRGVRKRP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 1e-17 | ERF family protein |